Related Experiment Video
Updated: Aug 18, 2026

Modeling Ligands into Maps Derived from Electron Cryomicroscopy
Published on: July 19, 2024
Visualization of Properties in the Fragment Molecular Orbital Method Using Facio
Masahiko Suenaga1, Dmitri G Fedorov2
1Department of Advanced Materials Science and Engineering, Faculty of Engineering Sciences, Kyushu University, 6-1, Kasugakoen, Kasuga City, Fukuoka, 816-8580, Japan.
None:
For evaluating binding in biochemical systems, the fragment molecular orbital method is used to calculate interaction and binding energies at various levels of theory. The graphical user interface program Facio is used to prepare input files and visualize fragment properties, supporting rational design of new molecular agents. The protein-ligand binding in the complex of HIV protease 6X mutant with an AB-2 ligand (PDB: 2HC0) is studied with various analyses.
Related Concept Videos
Molecular Orbital Theory I
Molecular Geometry and Dipole Moments
Molecular Orbital Theory II
Valence Bond Theory and Hybridized Orbitals
A σ bond (single bond in a Lewis structure) is a covalent bond in which the electron density is...
MO Theory and Covalent Bonding
Atomic Orbitals
