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Updated: Aug 19, 2026

Advances in Human Induced Pluripotent Stem Cell-Derived Chimeric Antigen Receptor-Expressing Natural Killer Cells
Published on: February 14, 2025
The spatial revolution in immuno-oncology: artificial intelligence decoding NK cell niches to predict therapeutic
Yun-Qiu Gao1,2,3, Tong Liu1,2,3, Yang Yang1,2,3
1Department of Dermatology, The First Hospital of China Medical University, Shenyang, Liaoning, China.
Abstract:
Natural killer (NK) cells are important effector cells of the innate immune system and have been investigated as a therapeutic platform for cancer immunotherapy. Although NK cell-based therapies have shown clinical activity in hematological malignancies, their application in solid tumors remains limited by restricted tumor infiltration, functional suppression, and the complexity of the tumor microenvironment (TME). Recent advances in spatial transcriptomics and artificial intelligence (AI) have provided new approaches for characterizing NK cell distribution, functional states, and cellular interactions within the TME. Critically, the spatial distribution and structural organization of NK cells within tumor niches - including their proximity to tumor cells, stromal barriers, and immune effector partners - are fundamental determinants of their cytotoxic function. A deeper understanding of how spatial context shapes therapeutic response is therefore central to advancing NK cell immunotherapy. This review summarizes how AI-assisted analysis of spatial and multi-omics data may contribute to the discovery and validation of biomarkers associated with NK cell therapy response. It also discusses the potential applications of AI in optimizing chimeric antigen receptor (CAR)-NK cell engineering, combination therapy strategies, and individualized dosing regimens. By synthesizing studies published in recent years, this review highlights the emerging shift from response prediction toward treatment optimization, while emphasizing the current limitations of available evidence, including model interpretability, data heterogeneity, causal inference, and clinical validation. Finally, we discuss how four-dimensional (4D) dynamic monitoring and explainable AI may support the future development of more precise and personalized NK cell immunotherapy strategies.
Insights
Artificial intelligence (AI) and spatial transcriptomics enhance understanding of natural killer (NK) cells in solid tumors. AI-driven analysis of spatial data optimizes NK cell therapies for improved cancer treatment outcomes.
Area of Science:
- Immunology
- Computational Biology
- Oncology
Background:
- Natural killer (NK) cells are crucial for innate immunity and cancer immunotherapy.
- NK cell therapy shows promise in blood cancers but faces challenges in solid tumors due to tumor microenvironment (TME) complexity and limited infiltration.
- Spatial context of NK cells within tumors significantly impacts their cytotoxic function and therapeutic efficacy.
Purpose of the Study:
- To review how AI-assisted analysis of spatial and multi-omics data can identify biomarkers for NK cell therapy response.
- To explore AI applications in optimizing chimeric antigen receptor (CAR)-NK cell engineering and combination therapies.
- To highlight the shift towards treatment optimization and personalized NK cell immunotherapy strategies.
Main Methods:
- Analysis of recent studies integrating spatial transcriptomics and artificial intelligence (AI).
- Characterization of NK cell distribution, functional states, and cellular interactions within the TME using AI.
- Review of AI's role in biomarker discovery, CAR-NK cell engineering, and combination therapy strategies.
Main Results:
- AI-assisted spatial analysis provides novel insights into NK cell behavior within the TME.
- Spatial distribution and interactions are key determinants of NK cell cytotoxic function.
- AI facilitates the discovery of biomarkers and optimization of NK cell-based cancer therapies.
Conclusions:
- AI and spatial transcriptomics are transforming NK cell immunotherapy research.
- Future strategies involve optimizing CAR-NK cell design, combination therapies, and personalized treatment regimens.
- Explainable AI and 4D dynamic monitoring are essential for developing precise and personalized NK cell immunotherapies, despite current limitations in validation and interpretability.
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