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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Report of Mucopolysaccharidosis Type VI Disorder in Pakistani Patients Presenting Two Novel ARSB Variants
Bibi Zubaida1,2, Hajira Batool1, Huma Arshad Cheema3
1Medical Genetics Research Laboratory, Department of Biotechnology, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
Abstract:
Mucopolysaccharidosis type VI (MPS-VI, Maroteaux-Lamy syndrome) is an inherited progressive disorder caused by the deficiency of the arylsulfatase B enzyme encoded by the ARSB gene. The deficient enzyme activity results in the accumulation of glycosaminoglycans in lysosomes with consequent enlargement of multiple tissues and organs. Due to overlapping clinical symptoms of MPS-VI with other MPS disorders, diagnosis is based on cumulative evaluation of clinical, biochemical, and molecular investigations. The current study recruited two unrelated Pakistani patients suffering from MPS-VI. The diagnosis of the patients was based on clinical assessments and biochemical parameters. We performed direct DNA sequencing of the ARSB gene to screen for pathogenic variants in the patients and their families. All coding exons and intron-exon boundaries were PCR-amplified and subjected to Sanger sequencing. In silico tools were used to predict the pathogenicity of the variants, which were then classified according to the ACMG guidelines. Molecular screening of the patients identified two novel variants: a 2-bp deletion NM_000046.5:c.511_512del and a missense substitution NM_000046.5:c.166G>A. In silico evaluation supported the deleterious effects of the identified variants on the protein function, leading to the MPS-VI phenotype. The study has its significance in expanding the mutation spectrum and may help the affected families in genetic counseling and prenatal diagnosis. To our knowledge, this is the second clinical and molecular genetic report of MPS-VI from Pakistan.
Insights
This study identified two novel ARSB gene variants in Pakistani patients with Mucopolysaccharidosis type VI (MPS-VI). These findings expand the known mutation spectrum for MPS-VI and aid genetic counseling and prenatal diagnosis.
Area of Science:
- Genetics
- Biochemistry
- Molecular Biology
Background:
- Mucopolysaccharidosis type VI (MPS-VI), or Maroteaux-Lamy syndrome, is an inherited disorder caused by arylsulfatase B enzyme deficiency.
- This deficiency leads to glycosaminoglycan accumulation, causing tissue and organ enlargement.
- MPS-VI diagnosis requires clinical, biochemical, and molecular evaluation due to overlapping symptoms with other MPS disorders.
Purpose of the Study:
- To identify pathogenic variants in the ARSB gene in two unrelated Pakistani MPS-VI patients.
- To characterize the identified variants using in silico tools and ACMG guidelines.
- To contribute to the understanding of the MPS-VI mutation spectrum in the Pakistani population.
Main Methods:
- Clinical and biochemical assessments were performed for patient diagnosis.
- Direct DNA sequencing of all coding exons and intron-exon boundaries of the ARSB gene.
- Sanger sequencing, in silico variant pathogenicity prediction, and ACMG guideline classification.
Main Results:
- Two novel pathogenic variants in the ARSB gene were identified: a 2-bp deletion (c.511_512del) and a missense substitution (c.166G>A).
- In silico analysis predicted deleterious effects of these variants on arylsulfatase B protein function.
- The identified variants are associated with the MPS-VI phenotype in the studied patients.
Conclusions:
- The study expands the known mutation spectrum for Mucopolysaccharidosis type VI.
- The findings provide valuable information for genetic counseling and prenatal diagnosis for affected families.
- This represents a significant clinical and molecular genetic report of MPS-VI from Pakistan.
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