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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
Splicing factor proline- and glutamine-rich (SFPQ) protein causes transcriptional repression of SNAIL to counteract
Niyati Pandya Thakkar1, Hariharan Jayakumar1, S Ramakrishnan1
1Department of Biological Sciences, Birla Institute of Technology and Science (BITS) Pilani, Pilani Campus, Rajasthan, India.
Abstract:
TGF-β is known to regulate several embryonic and adult signaling pathways. Moreover, this signaling pathway regulates several cellular functions including differentiation, cell division, angiogenesis, hematopoiesis, and cell migration. However, studies suggest that an uncontrolled activation of TGF-β signaling may contribute to many human diseases. Therefore, counter-regulatory mechanism(s) to restrain abrupt TGF-β activation during cellular homeostasis is necessary to maintain an adequate balance of TGF-β downstream signaling. TGF-β through Smad complex activation causes transcriptional regulation of many transcription factors including Snail which act as an immediate-early response gene in TGF-β signaling. Herein, for the first time, we report that Splicing factor proline- and glutamine-rich (SFPQ), an RNA binding paraspeckles-associated protein works as a transcriptional repressor of Snail. We first assessed SFPQ levels in a pro-fibrotic rat model of subtotal nephrectomy and observed a significant reduction in its expression. In endothelial cells (ECs), TGF-β treatment decreased SFPQ protein levels without affecting transcript levels, indicating post-translational regulation. Inhibition studies revealed ubiquitination-dependent proteasomal degradation of SFPQ upon TGF-β stimulation. Notably, TGF-β induced cytosolic translocation of SFPQ, leading to reduced nuclear levels. Functionally, SFPQ knockdown enhanced, while its overexpression suppressed, TGF-β-induced Snail expression. Although SFPQ interacted with transcription factors such as Smad2/3, Smad4, and N1-ICD, TGF-β did not alter these associations. Instead, ChIP-qPCR analysis demonstrated SFPQ enrichment at the E-box promoter and regions proximal to the Snail transcription start site. Collectively, these findings support a role for SFPQ in regulating Snail expression and modulating TGF-β-associated transcriptional responses in the experimental models examined in this study.
Insights
Splicing factor proline- and glutamine-rich (SFPQ) acts as a novel repressor of Snail, a key gene in TGF-β signaling. This study reveals SFPQ
Area of Science:
- Cellular Biology
- Molecular Biology
- Signaling Pathways
Background:
- Transforming growth factor-beta (TGF-β) signaling is crucial for cellular functions but its uncontrolled activation contributes to human diseases.
- Maintaining cellular homeostasis requires counter-regulatory mechanisms to balance TGF-β downstream signaling.
- Snail is an immediate-early response gene transcriptionally regulated by TGF-β signaling via Smad complexes.
Purpose of the Study:
- To identify novel regulators of TGF-β-induced Snail expression.
- To investigate the role of Splicing factor proline- and glutamine-rich (SFPQ) in TGF-β signaling and Snail regulation.
Main Methods:
- Assessed SFPQ expression in a pro-fibrotic rat model and in endothelial cells (ECs) treated with TGF-β.
- Investigated SFPQ regulation via ubiquitination, proteasomal degradation, and subcellular localization.
- Utilized SFPQ knockdown and overexpression studies, co-immunoprecipitation, and Chromatin Immunoprecipitation quantitative PCR (ChIP-qPCR).
Main Results:
- TGF-β stimulation decreased SFPQ protein levels in ECs through ubiquitination-dependent proteasomal degradation and cytosolic translocation.
- SFPQ functions as a transcriptional repressor of Snail, with SFPQ knockdown enhancing and overexpression suppressing TGF-β-induced Snail expression.
- SFPQ binds to the Snail promoter region, independent of Smad or N1-ICD interactions.
Conclusions:
- SFPQ acts as a novel transcriptional repressor of Snail, modulating TGF-β-induced responses.
- SFPQ degradation and cytosolic translocation are key post-translational mechanisms regulating its function in TGF-β signaling.
- SFPQ represents a potential therapeutic target for diseases associated with dysregulated TGF-β signaling.
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