Related Experiment Video
Updated: Aug 21, 2026

Detection of Bacteria Using Fluorogenic DNAzymes
Published on: May 28, 2012
A fiber-optic fluorescent biosensor based on DNAzyme-mediated multitag-regulated hybridization chain reaction for the
Huanxing Li1, Hang Yang1, Yilin Liu1
1Shanxi Key Laboratory of Complex Air Pollution Control and Carbon Reduction, College of Environment and Ecology, Taiyuan University of Technology, Taiyuan, 030024, PR China.
Abstract:
Portable yet ultrasensitive and accurate detection of trace Pb2+ in real environmental samples remains challenging. A rapid-response evanescent wave fluorescent biosensor with a reusable sensing surface offers significant advantages for in-situ and real-time measurements. Herein, we first report a reliable DNAzyme-based biosensor that leverages universal enzyme-free autonomous hybridization chain reaction (HCR)-integrated evanescent wave fluorescence, enabling accurate and facile detection of trace Pb2+. Target recognition activates the metal ion-responsive RNA cleavage activity of DNAzyme, which releases the initiator chain to trigger downstream HCR amplification circuits. The multitagged HCR products (dual-labeled with biotins and fluorophores) are detected through a two-step mechanism: (i) affinity-directed immobilization on streptavidin-functionalized optical fiber surfaces, followed by (ii) evanescent field-induced fluorescence readout. Under the optimal detection conditions, the evanescent wave fluorescent biosensing platform coupling DNAzyme recognition with multitag-regulated HCR amplification achieves a limit of detection of 0.09 nM and a linear response range of 1 to 500 nM. With the optical fiber sensing surface being regenerable for more than 100 cycles, this biosensor enables cost-effective repeated detection. Pb2+ spike-recovery validation in negative environmental water samples confirms the reliability of this technique in complex matrices. The robust detection performance of this technique demonstrates its promising potential for the on-site quantification of metal ion contaminants in the environment.

