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Updated: Aug 21, 2026

A Tandem Liquid Chromatography–Mass Spectrometry-based Approach for Metabolite Analysis of Staphylococcus aureus
Published on: March 28, 2017
A c-di-AMP-controlled glutamine synthesis pathway promotes persistence of Staphylococcus aureus thymidine-dependent
Joshua P Leeming1, Shoukai Kang2, Pearl P Thakkar1
1Department of Biology, University of Texas at Arlington, Arlington, TX, 76019, USA.
Insights
Staphylococcus aureus thymidine-dependent small-colony variants (TD-SCVs) survive in cystic fibrosis lungs by synthesizing glutamine. This process, regulated by cyclic di-AMP (c-di-AMP), offers a potential therapeutic target for resistant bacterial infections.
Area of Science:
- Microbiology
- Infectious Diseases
- Bacterial Pathogenesis
Background:
- Children with cystic fibrosis (CF) frequently harbor Staphylococcus aureus thymidine-dependent small-colony variants (TD-SCVs).
- TD-SCVs are linked to decreased lung function and increased respiratory issues in CF patients.
- The survival mechanisms of TD-SCVs in the thymidine-limited CF lung remain unclear.
Purpose of the Study:
- To investigate how TD-SCVs survive in the thymidine-limited environment of the CF lung.
- To elucidate the molecular pathways governing TD-SCV survival and growth.
- To identify potential therapeutic targets for combating S. aureus TD-SCV infections.
Main Methods:
- Studied TD-SCV glutamine uptake and de novo synthesis pathways.
- Investigated the role of cyclic di-AMP (c-di-AMP) in regulating glutamine synthesis.
- Utilized murine models to assess TD-SCV survival and growth.
- Examined the effect of GlnA inhibition on TD-SCV proliferation.
Main Results:
- TD-SCVs exhibit impaired glutamine uptake and rely on c-di-AMP-regulated de novo glutamine synthesis for survival.
- Transcription of the glutamine synthetase gene (glnA) is repressed by GlnR, PstA, and GlnA.
- Glutamine starvation increases c-di-AMP levels, relieving repression and promoting glutamine synthesis.
- Reduced c-di-AMP levels impair TD-SCV growth, which is rescued by glnA overexpression.
- Pharmacological inhibition of GlnA significantly hinders TD-SCV growth in vivo.
Conclusions:
- The study reveals the molecular mechanism of S. aureus TD-SCV survival in CF lungs, highlighting reliance on glutamine synthesis.
- Cyclic di-AMP (c-di-AMP) plays a crucial role in regulating glutamine synthesis in response to nutrient availability.
- Glutamine synthetase (GlnA) is identified as a promising therapeutic target for treating infections caused by antifolate-resistant bacteria like S. aureus TD-SCVs.
Abstract:
Children with cystic fibrosis (CF) commonly harbor Staphylococcus aureus thymidine-dependent small-colony variants (TD-SCVs), which are associated with reduced lung function and increased respiratory exacerbations. How TD-SCVs survive in the thymidine-limited CF lung is unknown. Here, we show that TD-SCVs exhibit impaired glutamine uptake and depend on c-di-AMP-regulated de novo glutamine synthesis for survival in the murine lung. We found that transcription of the glutamine synthetase gene glnA is cooperatively repressed by the transcriptional regulator GlnR, the c-di-AMP-binding protein PstA, and GlnA itself. Glutamine starvation elevates c-di-AMP levels, relieving repression by this ternary complex and promoting glutamine synthesis. Reducing c-di-AMP levels causes a profound growth defect in TD-SCVs under low-thymidine conditions, which is rescued by glnA overexpression. Moreover, pharmacological inhibition of GlnA markedly impairs TD-SCV growth in murine lung. These findings elucidate the molecular mechanism underlying S. aureus TD-SCV survival during infection and identify glutamine synthesis as a promising therapeutic target for treating infections caused by antifolate-resistant bacteria.
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