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Updated: Aug 21, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
FLT3-ITD signals for CEBPA and p53 proteolysis by the ubiquitin-proteosome pathway
Yogen Saunthararajah1, Xiaorong Gu2, Sudipta Biswas1
1Cleveland Clinic.
Abstract:
FLT3-ITD mutations in acute myeloid leukemias (AMLs) cause ligand-independent signaling. One way signaling pathways potently and immediately influence cell fates is by phosphorylating key fate-determining proteins to trigger their proteolysis. We investigated the master transcription factor (MTF) driver of granulo-monocytic lineage-fates, CEBPA, for regulation by this mechanism because we found high CEBPA mRNA but little CEBPA protein in FLT3-ITD versus FLT3-wildtype AML cells, and inhibiting FLT3-ITD signaling with tyrosine kinase inhibitors (TKI) rapidly rescued CEBPA protein. Mass spectrometry revealed that CEBPA interacts with major ubiquitin-proteasome pathway (UPP) components: the ubiquitin-ligase UHRF1 and the deubiquitinase USP7. TKI treatment decreased the phosphorylation of CEBPA (Ser21) and USP7 (Ser18) alongside shifts in CEBPA interactions from degradative UHRF1 to protective USP7, stabilizing CEBPA and activating differentiation. Similarly, TKIs and UPP inhibitors stabilized the USP7 client p53, triggering apoptosis specifically in FLT3-ITD cells. Notably, UPP inhibitors (such as bortezomib) successfully stabilized CEBPA and p53 even in TKI-resistant FLT3-ITD cells. Because FLT3-ITD signaling functionally suppresses CEBPA and p53, genetic mutations in CEBPA or TP53 were mutually exclusive with FLT3-ITD in clinical series. In summary, FLT3-ITD drives the UPP-mediated destruction of CEBPA and p53, positioning UPP inhibitors as promising therapeutic candidates acting downstream of TKIs.
Insights
FLT3-ITD mutations in acute myeloid leukemia (AML) drive cancer cell survival by promoting CEBPA and p53 protein destruction. Ubiquitin-proteasome pathway inhibitors offer a promising therapeutic strategy for AML by stabilizing these key proteins.
Area of Science:
- Molecular Biology
- Cancer Biology
- Hematology
Background:
- FLT3-ITD mutations in acute myeloid leukemia (AML) lead to uncontrolled cell signaling.
- Protein degradation pathways, like the ubiquitin-proteasome pathway (UPP), regulate cell fate.
- CEBPA is a master transcription factor crucial for granulomonocytic lineage differentiation in AML.
Purpose of the Study:
- To investigate if FLT3-ITD signaling regulates CEBPA protein stability via proteolysis.
- To identify the role of the ubiquitin-proteasome pathway (UPP) in FLT3-ITD-driven AML.
- To explore therapeutic strategies targeting UPP in FLT3-ITD AML.
Main Methods:
- Compared CEBPA protein and mRNA levels in FLT3-ITD versus FLT3-wildtype AML cells.
- Utilized mass spectrometry to identify interactions between CEBPA and UPP components (UHRF1, USP7).
- Assessed the effects of tyrosine kinase inhibitors (TKIs) and UPP inhibitors on protein phosphorylation, interactions, and stability.
Main Results:
- FLT3-ITD AML cells showed low CEBPA protein despite high mRNA; TKIs rapidly restored CEBPA.
- CEBPA interacts with UHRF1 (ligase) and USP7 (deubiquitinase); TKI treatment shifted interactions from UHRF1 to USP7, stabilizing CEBPA.
- UPP inhibitors stabilized CEBPA and p53, inducing apoptosis in FLT3-ITD cells, including TKI-resistant cases.
Conclusions:
- FLT3-ITD signaling promotes the UPP-mediated degradation of CEBPA and p53.
- Targeting the UPP stabilizes key tumor suppressor proteins, offering a therapeutic avenue.
- UPP inhibitors are promising candidates for treating FLT3-ITD AML, potentially overcoming TKI resistance.
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