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Updated: Aug 21, 2026

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro
Published on: September 26, 2025
µORScreen: a lightweight consensus modeling framework for µ-opioid receptor ligand prediction and virtual screening
Keyu Chen1, Juan Huang2, Jiangcheng Xu3
1Sichuan Police College Luzhou 646000 Sichuan China 2678554330@qq.com xjxdy3110257@scpolicec.edu.cn.
None:
Opioid use disorder (OUD) remains a major public health challenge, and the human µ-opioid receptor (µOR) is a central target in opioid pharmacology. Here, we report a reproducible ligand-based workflow for µOR antagonist classification named µORScreen which integrates rigorous split design, systematic model benchmarking, interpretation, virtual screening and lightweight local deployment. A curated set of 982 human µOR ligands was partitioned under three complementary strategies (similarity-based, scaffold-based, and random-based), each with a held-out test set and five train/validation folds. On the test evaluation, LightGBM (ECFP4 with RDKit 2D descriptors) generalized best (AUROC 0.714), closely followed by TabPFN (0.705) and Random Forest (0.696). The three top-ranked models were combined into a consensus classifier that prioritized unanimously predicted compounds as high-confidence antagonist-like candidates. Applied to GPCRdb, ZINC, REINVENT, and OUROBOROS, µORScreen revealed pronounced source dependence, with the strongest enrichment of antagonist-like candidates in GPCRdb. On an independent set of 17 non-overlapping, literature-derived ligands (10 antagonists, 7 non-antagonists), the consensus achieved a balanced accuracy of 0.68. SHAP analysis attributed predictions to a concentrated subset of fingerprint features, and the workflow was deployed as a web server supporting SMILES-based prediction and RF-based SHAP analysis. µORScreen thus provides a computationally efficient, openly accessible framework for early-stage µOR ligand prioritization and external-library triage.
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