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Post‑translational modification‑governed immune states in cancer immunity: Biomarker implications for checkpoint
Jinghao Pan1, Boyang Li1, Ruonan Lin1
1Department of Breast Surgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, P.R. China.
Abstract:
Immune escape and therapeutic resistance remain major obstacles to durable benefit from cancer immunotherapy, yet transcript‑based or abundance‑based biomarkers often fail to capture the regulatory states that determine effective immune control. Post‑translational modifications (PTMs) form a dynamic protein‑state layer that rapidly reshapes protein stability, trafficking, complex assembly, and signaling persistence under tumor‑intrinsic and therapy‑imposed stress. In the present review, a biomarker‑oriented framework is proposed in which PTM biology is interpreted through three recurrent immune constraints: Checkpoint competence, tumor visibility and stress‑conditioned immune‑state programming. Within this framework, programmed death‑ligand 1 is viewed as a protein‑state biomarker problem rather than a static expression marker; tumor visibility is defined by durable antigen‑presentation competence and interferon‑linked reinforcement; and stress‑driven immune dysfunction is interpreted through metabolite‑sensitive PTM rewiring and chromatin‑coupled suppressive stabilization. Rather than cataloguing PTMs comprehensively in cancer immunity, the present review focuses on five core exemplar PTM axes, glycosylation, palmitoylation, ubiquitin editing, phosphorylation and lactylation, because they repeatedly map to rate‑limiting immune constraints, are supported by mechanistic evidence, and represent candidate assay‑compatible or intervention‑relevant state variables at differing levels of translational maturity. It is further outlined how integrated proteogenomic, immuno‑peptidomic, and spatial datasets can be used to discover candidate PTM‑state biomarkers, validate mechanism‑proximal readouts in prespecified pretreatment and on‑treatment settings, and prioritize single or co‑dominant state constraints for patient stratification, pharmacodynamic monitoring, and rational combination design. By organizing PTM biology around measurable state variables rather than modification class alone, the present review provides a phase‑aware translational framework for candidate biomarker discovery, fit‑for‑purpose validation, constraint‑guided stratification, and therapeutic prioritization in cancer immunotherapy.
Insights
Post-translational modifications (PTMs) offer a dynamic layer of protein regulation critical for cancer immunotherapy. Understanding PTM states, not just abundance, can overcome immune escape and resistance for better patient outcomes.
Area of Science:
- Cancer Immunology
- Proteomics
- Biomarker Discovery
Background:
- Cancer immunotherapy faces challenges with immune escape and therapeutic resistance, often not addressed by current transcript or abundance-based biomarkers.
- Post-translational modifications (PTMs) represent a dynamic regulatory layer influencing protein behavior under tumor and therapy-induced stress.
- Effective immune control relies on regulatory states that current biomarkers often fail to capture.
Purpose of the Study:
- To propose a biomarker-oriented framework for interpreting PTM biology in cancer immunity.
- To focus on key PTM axes (glycosylation, palmitoylation, ubiquitin editing, phosphorylation, lactylation) relevant to immune constraints.
- To outline how integrated datasets can discover and validate PTM-state biomarkers for improved cancer immunotherapy.
Main Methods:
- Interpreting PTM biology through three immune constraints: checkpoint competence, tumor visibility, and stress-conditioned immune-state programming.
- Examining five core PTM axes with mechanistic evidence and translational potential.
- Utilizing integrated proteogenomic, immuno-peptidomic, and spatial datasets for biomarker discovery and validation.
Main Results:
- Programmed death-ligand 1 is reframed as a protein-state biomarker problem.
- Tumor visibility is defined by antigen-presentation competence and interferon signaling.
- Stress-driven immune dysfunction is linked to metabolite-sensitive PTMs and chromatin modifications.
Conclusions:
- Organizing PTM biology around measurable state variables provides a translational framework for biomarker discovery and validation.
- This approach facilitates patient stratification, pharmacodynamic monitoring, and rational combination therapy design.
- Focusing on PTM states offers a path to overcome immune escape and resistance in cancer immunotherapy.
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