Related Experiment Video
Updated: Aug 29, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
[Electroclinical recognition of SCN2A, SCN8A, KCNQ2, and KCNQ3 pathogenic variants]
1Division of Pediatric Neurology at Jim Pattison Children's Hospital, Department of Pediatrics, University of Saskatchewan; Saskatoon, Saskatchewan, Canada.
Abstract:
Genetic epilepsies presenting in the neonatal period and early infancy require time-critical, mechanism-aware decisions. Amplitude-integrated EEG (aEEG) provides continuous bedside screening in the NICU, but its yield improves when seizures are confirmed and characterized with multichannel conventional EEG (referred to here as rEEG; the term "continuous EEG or cEEG" is reserved for prolonged monitoring). In KCNQ2/KCNQ3 and SCN2A channelopathies, a distinctive ictal aEEG sequence-brief initial attenuation/decrease, rapid rise, and postictal depression-correlates with reproducible ictal features on rEEG/cEEG. Recognizing this signature may prompt rapid genetic testing and, when clinically appropriate, earlier targeted therapy with sodium-channel blockers, reducing prolonged ineffective polytherapy. SCN8A shows broader electroclinical heterogeneity without a single signature; however, normal brain MRI combined with high early seizure burden (often bilateral tonic-clonic seizures) and a progressively abnormal EEG should raise suspicion. This narrative review provides a pragmatic framework for SCN2A, SCN8A, KCNQ2, and KCNQ3, integrates the phenotype spectrum (including self-limited forms with potentially normal EEG), highlights safety considerations (including SUDEP), and briefly summarizes emerging precision-therapy under clinical investigation.
Related Concept Videos
Voltage-gated Ion Channels
Generally, all voltage-gated ion channels have a 'voltage-sensing domain' that spans the lipid bilayer. The charged residues in the sensor move in response to the membrane potential changes that open the channel allowing ions movement. There are several types of...
Comparing Copy Number Variations and SNPs
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Single Nucleotide Polymorphisms-SNPs
