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Updated: Aug 31, 2026

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
Published on: July 7, 2010
A gene set collection of human RBP target genes
Markus Glaß1, Stefan Hüttelmaier2
1Institute of Molecular Medicine, Section for Molecular Cell Biology, Faculty of Medicine, Martin Luther University, Halle-Wittenberg, Germany. markus.glass@medizin.uni-halle.de.
Abstract:
RNA binding proteins (RBPs) are key post-transcriptional regulators controlling every aspect of the RNA life cycle from synthesis to decay. We extracted RBP target genes from publicly available enhanced cross-linking and immuno-precipitation followed by sequencing (eCLIP-seq) data of 168 RBPs and assembled a gene set collection that can be used to examine gene lists for enriched RBP targets via functional enrichment analysis methods like over-representation analysis (ORA), gene set enrichment analysis (GSEA) or gene set variation analysis (GSVA).
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