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Efficient Computation of Physical Charging Free Energies for Monatomic Ions at Any Charge along Alchemical Charging
Lakshmanji Verma1, Ken A Dill1,2
1Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York11794, United States.
Abstract:
One way to compute solvation free energies is through standard alchemical free energy (AFE) methods. But they can be expensive, and they do not give useful atomwise or site-specific decompositions. Alternatively, these challenges are partly addressed by bottom-up methods, like semi-explicit assembly (SEA), that start from atomic units and handle larger molecules using additivity rules. The latter methods require databases only on elementary monatomics. Here, we present an efficient strategy, λ-resolved free energy (λFE), to generate such databases. By resolving physical charging free energies at any intermediate charge state from a single alchemical free-energy simulation, λFE eliminates the need for separate alchemical charging calculations for atom types that differ only in their charge. This approach is significantly less costly and is robust across a range of charges, LJ parameters, system sizes, and three water models (TIP3P, TIP4P/EW, and TIP4P/2005). Combined with a cubic polynomial fit to the alchemical charging free energies, λFE yields a closed-form expression for absolute charging free energies of monatomic ions with any charge from a single alchemical simulation.
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