Related Experiment Video
Updated: Sep 3, 2026
CorrelationCalculator and Filigree: Tools for Data-Driven Network Analysis of Metabolomics Data
Published on: November 10, 2023
Metabolomics Data Analysis with the HMDB
Yamilé López-Hernández1,2, Prashanthi Kovur1, David S Wishart3,4,5,6
1Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada.
Abstract:
The Human Metabolome Database (HMDB) is a web-based resource that supports metabolite identification and interpretation for human studies. This chapter outlines five protocols: (1) identifying metabolites using mass spectrometry with retention time or collision cross-section data (MS-RT/CCS); (2) identifying metabolites using tandem mass spectrometry (MS/MS); (3) identifying metabolites using nuclear magnetic resonance (NMR); (4) comparing measured concentrations to HMDB reference values; and (5) interpreting metabolomics results via HMDB's MetaboCards and PathBank links.
More Related Videos
11:02Identification and Quantification of Deranged Metabolites in Critically Ill Patients Using NMR-Based Metabolomics
Published on: November 29, 2024
11:47Concentration of Metabolites from Low-density Planktonic Communities for Environmental Metabolomics using Nuclear Magnetic Resonance Spectroscopy
Published on: April 7, 2012