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Updated: Sep 9, 2026

High-Throughput Analysis of Non-Photochemical Quenching in Crops Using Pulse Amplitude Modulated Chlorophyll Fluorometry
Published on: July 6, 2022
Theoretical explanation of efficient non-radiative deactivation of zeaxanthin
Dmitry Chernishev1, Victor Kostjukov1
1Sevastopol State University, Universitetskaya str., 33, Sevastopol 299053, Crimea, Ukraine. Viktor_Kostukov@mail.ru.
Abstract:
We present a detailed TD-DFT/DFT analysis of light absorption by the carotenoid pigment zeaxanthin (Zea), which plays an important role in photosynthesis and photoprotection. Zea can exist in six conformations determined by the rotation of the cyclohexene rings (RR, RL, LL, TT, RT, and LT), each of which was modeled separately. To accurately theoretically reproduce the optical properties of this pigment, the M11 functional was selected. Combined with the 6-31++G(d,p) basis set and the IEFPCM solvent model, we obtain a good agreement between the calculated and experimental absorption spectra. Zea's vibronic transitions and the excited-state vibrations they activate were analyzed. These vibrations were found to be very large-scale, utilizing a large fraction of the Zea molecule and thus capable of efficiently transferring the energy gained from photoexcitation to the surrounding medium. For the first time, we obtained the S2 profile of the excited state of Zea along the ring rotation. Compared to a ground-state one, we found that the R → T, T → R, L → T, and T → L conformational transitions are hindered upon excitation, while R → L and L → R transitions are facilitated. Since the proportions of RR, RL, and LL conformers significantly predominate over the others, light irradiation of Zea actually promotes its conformational transitions. We assume a significant role of vibrational relaxation of the pigment molecule in the S1 state: vibration of the alternating stretching-compression of single and double bonds of the polyene chain has a huge intensity and can effectively transfer the vibrational energy of Zea to the environment. Photoinduced electron density shifts in the Zea molecule were also obtained. The redistributions of electron density accompanying S2 → S1 and S1 → S0 relaxations are much more significant than for S0 → S2 excitation.
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