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Augmenting Large Language Models via Vector Embeddings to Improve Domain-Specific Responsiveness
Published on: December 6, 2024
MEDAL: Sequential adapter learning for privacy-preserving multicenter clinical language models
Ahmed Bakr1, Augusto Garcia-Agundez2, Travis Atkison3
1Department of Computer Science, The University of Alabama, Tuscaloosa, AL, 35401, USA; DataUnite, Inc., Cupertino, CA, 95014, USA.
Background:
Scalable reasoning over clinical notes is a major goal in medical artificial intelligence. Large Language Models (LLMs) are promising for this task, particularly when fine-tuned on multicenter note corpora, but progress has been limited by barriers to data sharing and technical gaps in Federated Learning (FL).
Methods:
We developed Multi-institutional Efficient/Distributed Adapter Learning (MEDAL), a framework that sequentially fine-tunes lightweight LLM adapters across health systems without transferring patient-level data. We applied MEDAL to fine-tune LLaMA-3.1-8B for two discharge-summary tasks: identifying sepsis and in-hospital mortality. We trained this LLM using three siloed datasets: MIMIC-IV, a University of California, San Francisco (UCSF) adult ICU cohort, and a UCSF pediatric ICU cohort, with one GPU per site across the University of Texas at Austin and UCSF. We compared the multicenter MEDAL model with a centralized pooled-data model, single-center models, and GPT-5. To further evaluate MEDAL's stability at scale, we partitioned MIMIC-IV into 10 virtual centers and sequentially fine-tuned adapters across them.
Results:
Using MEDAL to fine-tune LLaMA-3.1-8B yielded high F1 scores approaching the upper bound of centralized data pooling, outperforming frontier models such as GPT-5 by up to 16.6 percentage points, and consistently outperforming center-specific locally fine-tuned models across the target tasks. In the 10-center experiment, performance converged quickly and remained stable across training rounds.
Conclusion:
MEDAL is a scalable method for fine-tuning LLMs across many health systems without sharing patient-level data, enabling high-performance local models for reasoning over clinical notes. MEDAL may also be useful for training multimodal healthcare AI models.