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Isolation of Cognate RNA-protein Complexes from Cells Using Oligonucleotide-directed Elution
Published on: January 16, 2017
The RNA-binding protein Psc1 functions downstream of the NDR/LATS kinase Cbk1 to modulate CO2 tolerance in
Emma E Blackburn1, Laura C Ristow2, Xiaofeng Xie1
1Department of Microbiology, University of Georgia, Athens, Georgia, USA.
Abstract:
Cryptococcus neoformans is an opportunistic fungal pathogen responsible for approximately 20% of deaths in patients with HIV/AIDS. Adaptation to host physiological conditions, including high CO2, is required for infection. We discovered that an uncharacterized protein with an RNA-binding domain, Psc1, functions as a basidiomycete-specific suppressor of the kinase mutant cbk1Δ and partially rescues its growth defect in high CO2. Psc1 contains multiple consensus cell wall biosynthesis kinase 1 (Cbk1) phosphorylation sites that are required for maintenance of CO2 fitness. We hypothesized that, in the absence of Cbk1, Psc1 negatively regulates CO2 tolerance by binding to and interfering with the function of mRNAs required for CO2 tolerance. Supporting this model, we found that multiple mRNAs that are required for CO2 tolerance associate with Psc1 in the absence of Cbk1. Furthermore, the transcripts of ZDS3, a gene required for CO2 tolerance, predominantly colocalize with Psc1, which forms condensates in the cbk1Δ mutant at high CO2, correlating with impaired growth. Collectively, our findings support the conclusion that C. neoformans adapts to high CO2 through a post-transcriptional mechanism where Cbk1 phosphorylates Psc1, preventing its binding to, and subsequent functional inhibition of, mRNAs important for CO2 tolerance.IMPORTANCEHigh CO2 is growth-inhibitory, and therefore adaptation to high CO2 stress is a universal cellular phenomenon required for survival. The environmental fungus, Cryptococcus neoformans, encounters high CO2 environments in the host, and thus tolerance to high CO2 is critical for its ability to cause lethal infections. The regulation of Ace2p and morphogenesis (RAM) pathway is required for its growth in high CO2. We found that CO2 tolerance is mediated post-transcriptionally by a downstream target of the RAM pathway, the RNA-binding protein Psc1. In the absence of the RAM pathway, Psc1 sequesters mRNA transcripts required for growth in high CO2, preventing growth. These findings reveal a previously uncharacterized post-transcriptional regulatory mechanism that controls cryptococcal adaptation to high CO2.
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