Related Experiment Video
Updated: Sep 22, 2026

Functional Complementation Analysis (FCA): A Laboratory Exercise Designed and Implemented to Supplement the Teaching of Biochemical Pathways
Published on: June 24, 2016
Plant NAOGAT (ArgJ) Structure Reveals Mechanism of Ornithine Biosynthesis, Preference for Acetylornithine and
Maciej Nielipinski1, Agnieszka J Pietrzyk-Brzezinska1, Aleksandra Twarda-Clapa1
1Institute of Molecular and Industrial Biotechnology, Faculty of Biotechnology and Food Sciences, Lodz University of Technology, Łódź, Poland.
Abstract:
Arginine metabolism in plants is targeted by phytopathogens such as Pseudomonas syringae strains, which produce toxins that affect enzymes of plant arginine metabolism, causing devastating infections in crops. In this work, the structural and functional properties of plant N-acetylornithine glutamate acetyltransferase (NAOGAT), the key deacetylating enzyme of the cyclic ornithine pathway and the target of mangotoxin, were investigated. We determined the structures of rice and maize NAOGATs to near-atomic resolution. Plant NAOGATs demonstrate a characteristic ArgJ-like N-terminal nucleophile fold, undergoing autoproteolytic maturation into α and β subunits, generating an active-site threonine nucleophile at the N-terminus of the β-chain. The enzyme catalyses acetyl transfer via a bi-bi ping-pong mechanism in a bidirectional manner, although the acetylornithine-to-acetylglutamate conversion is preferred. NAOGAT undergoes minimal structural rearrangements during the reaction, however threonine acetylation causes pronounced changes in electrostatic potential around the active site which is also exhibited by the increased NAOGAT stability in the thermal shift assay. We did not detect clear evidence of NAOGAT acetylation by acetylCoA in our structural and biophysical data, which supports the specialisation of plant NAOGATs towards acetylornithine-glutamate transacetylation. Finally, predictive bioinformatic analysis of the P. syringae mangotoxin-producing operon, in the context of NAOGAT architecture, provided a basis for potential structural features of mangotoxin.
Related Concept Videos
Key Elements for Plant Nutrition
Allosteric Proteins-ATCase
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Inorganic Nitrogen Assimilation
Amino Acid Biosynthetic Pathways
Biosynthesis of Nucleic Acids

