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Substructure Analyzer: A User-Friendly Workflow for Rapid Exploration and Accurate Analysis of Cellular Bodies in Fluorescence Microscopy Images
Published on: July 15, 2020
AdvLIF: An Adversarially and Physics-Inspired Framework for Virtual Staining and Nucleus Segmentation
Qi Yu1, Chunxue Shao1, Renyu Yang1
1Division of Computational Biology, Chinese Center of Exercise Epidemiology, Northeast Normal University, Renmin Street, 130024, Changchun, China.
Abstract:
Existing deep learning methods for virtual staining often produce quantitatively unreliable results, hindering their use for precise single-cell analysis. This limitation is associated with treating cross-stain reconstruction as a simple image style-transfer problem despite the substantial differences in appearance and information content between the source IHC image and the target morphological and molecular representations. In this work, we introduce AdvLIF, an adversarially regularized and physics-inspired framework for jointly generating H&E-like and complementary auxiliary modalities from IHC images and segmenting nuclei. AdvLIF incorporates reaction-diffusion- and Poisson-inspired operators for latent feature evolution and boundary-aware reconstruction, together with adversarially regularized fusion and skip-routing mechanisms. Extensive evaluations demonstrate that AdvLIF not only surpasses state-of-the-art methods in segmentation accuracy, achieving leading Dice and IoU scores of 0.775/0.636 on BCData and 0.765/0.623 on DeepLIIF, but also achieves superior quantitative fidelity, exemplified by the lowest error (0.092) on the IHC Quantification Difference metric.

