Related Experiment Video
Updated: Sep 24, 2026

A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Iterative Development of an AI-Assisted Data Extraction Tool for Literature Synthesis in Oncology
Anne Liu1,2, Faisal Alfadli1,3,4, Philip Wong1,3,4
1Radiation Medicine Program, Princess Margaret Cancer Centre, University Health Network, Toronto, CAN.
Abstract:
As oncology research continues to advance, the synthesis of clinical trial evidence is becoming more demanding for healthcare professionals, yet it remains critical for improving the provision of care. While sometimes inconsistent, large language models (LLMs) have emerged as a potential solution to automate literature screening and data extraction. This technical report describes the iterative development of an AI-assisted literature synthesis tool for radiation oncology research. A screening and data extraction tool was developed in three phases using ChatGPT-4o. In Phase 1, prompts were iteratively refined to screen 840 abstracts for Phase 2/3 radiotherapy trials in small cell lung cancer (SCLC). Screening performance was compared against manual reviewer consensus using sensitivity and specificity. In Phase 2, 13 clinical trial variables were extracted from 18 eligible studies and evaluated against a manual extraction reference with a weighted scoring rubric. In Phase 3, a web-based application was developed using the optimized prompts from the first two phases and pilot-tested on eight healthcare professionals for usability and workflow relevance. In the first two phases, the initial prompts had many false positives and inconsistent extractions. Iterative prompt refinement across the second and third batches of studies improved both screening accuracy and extraction consistency. In the validation batch, the final screening model achieved 100% sensitivity and specificity, and the data extraction prompts obtained a mean score of 12.0 (SD: 0.5) out of 13. During Phase 3, pilot testers reported that the application helped them read and compare clinical trial data through concise, structured tables. Users also provided suggestions for future development, including role-dependent personalization and visualization tools. Prompt-engineered LLM models show potential for improving efficiency and accessibility of literature screening and data extraction in oncology research. Future work will integrate the feedback obtained and externally validate the tool using larger independent datasets and multidisciplinary user cohorts.
More Related Videos
05:47Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
08:43A Study on an Intelligent Diagnosis and Treatment Assistant System for Acupuncture in Diminished Ovarian Reserve Based on a Knowledge Graph
Published on: May 29, 2026
Related Concept Videos
Cancer Therapies
However, cancer treatments can pose several challenges, as therapies used to kill cancer cells are generally also toxic to normal cells. Moreover, cancer cells mutate rapidly and can develop resistance to chemical agents or radiation therapy. Besides, all types of cancer cells may not respond to the same therapy. Some cancer cells respond to one...
Targeted Cancer Therapies
There are several types of targeted therapies against specific...
Combination Therapies and Personalized Medicine
The combination of the drug acetazolamide and sulforaphane is a good example of combination therapy to treat cancer. The cells in the interior of a large tumor often die due to the hypoxic and...
Drug Discovery: Overview
Preclinical Development: Overview
Tumor Immunotherapy