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Updated: Sep 24, 2026

Non-invasive 3D-Visualization with Sub-micron Resolution Using Synchrotron-X-ray-tomography
Published on: May 26, 2008
ChemGraph-XANES: an agentic framework for XANES simulation and curation
Vitor F Grizzi1, Thang Duc Pham2, Luke N Pretzie1
1Chemical Sciences and Engineering Division, Argonne National Laboratory Lemont IL 60439 USA congliu@anl.gov.
Abstract:
Computational X-ray absorption near-edge structure (XANES) is widely used to interpret local coordination environments, oxidation states, and electronic structure, but large computational campaigns are often limited by workflow complexity. We present ChemGraph-XANES, a large language model (LLM)-based agentic framework that combines documentation-grounded parameter retrieval via retrieval-augmented generation (RAG), schema-constrained tool execution, deterministic FDMNES input generation, Parsl-backed execution, and provenance-aware data curation. Scripted and natural-language interfaces share a common scientific backend for structure handling, parameterization, execution, spectral extraction, and optional post-processing. We evaluate three workflow modes: documentation-grounded parameter propagation, structure-file-based execution, and composition-based execution from a chemistry-level request. Repeated trials yielded end-to-end completion in 10/10 composition-based runs, 10/10 structure-file-based runs, and 9/10 documentation-grounded RAG runs. In every RAG run, the energy-grid specification retrieved from the FDMNES manual was correctly propagated, with the single end-to-end failure occurring downstream during multi-structure handling. In a separate task-parallel demonstration, the framework retrieved 21 TiO2 structures from the Materials Project and submitted one FDMNES calculation per structure. All calculations completed successfully, with Parsl distributing the independent tasks across the user-configured worker pool. Together, these results show that ChemGraph-XANES provides a constrained and reproducible orchestration layer for computational spectroscopy, supporting consistent execution of representative tasks, documentation-linked parameter selection, and task-parallel generation of structure-linked XANES collections.
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