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Updated: Sep 29, 2026

DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
Published on: December 29, 2021
Towards density-optimal DNA storage with practical bijective coding
Jiasen Li1, Mingkai Dong1, Zhengwei Qi1
1School of Computer Science, School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University, Shanghai, China.
Abstract:
DNA storage is a promising solution to data explosion due to its high density and longevity. However, existing coding methods struggle to efficiently avoid error-prone sequences while retaining usable ones, leading to low density and high copy numbers. Here we show Siyuan Code, a DNA storage codec that achieves theoretically optimal density. Our method maps binary data to nearly all suitable low-error sequences in a one-to-one manner, using our data structure to catalog and avoid error-prone patterns. This allows operation under very strict biochemical constraints with minimal redundancy. Experiments demonstrate a storage density of 1.66 bits per nucleotide and a capacity of 41 exabytes per gram of DNA, with perfect data retrieval using only six copies per strand. Encoding and decoding speeds reach approximately 1 megabyte per second on commodity hardware, comparable to early USB flash drives. These results bring DNA storage closer to practical deployment.
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