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Updated: Oct 8, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
53BP1 condensates regulate DNA replication progression and completion
Fangfang Wang1,2, Xinran Geng2, Junqiu Zhang1
1Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, State Key Laboratory of Bioactive Molecules and Druggability Assessment, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Ministry of Education of China, Guangdong-Hong Kong-Macau Joint Laboratory for Pharmacodynamic Constituents of Traditional Chinese Medicine and New Drugs Research, Genome Integrity and Natural Product Therapeutics Research Team, Jinan University, Guangzhou 510632, People's Republic of China.
Abstract:
DNA replication in mammalian cells proceeds in chromosomal domains during defined windows of S phase; however, the mechanisms coordinating replication with restoration of chromatin states remain incompletely understood. Here, we identify p53-binding protein 1 (53BP1) condensates as regulators of heterochromatin replication and epigenetic restoration. Loss of 53BP1 delays mid-to-late S-phase progression, compromises recruitment of epigenetic restoration factors, and impairs timely completion of heterochromatin replication and restoration of heterochromatin-associated epigenetic marks. These defects were rescued by wild-type or condensate-competent 53BP1, but not by condensate-deficient mutants. Further, 53BP1 condensate formation and its role in heterochromatin replication depend on interaction with proliferating cell nuclear antigen, which also mediates 53BP1 relocalization from condensates to DNA damage foci upon genotoxic stress. Together, our findings reveal a previously unrecognized role for 53BP1 condensates in coordinating heterochromatin replication and epigenetic restoration, while serving as a reservoir for DNA damage response.
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