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Updated: Oct 8, 2026

Thrombus Profiling Assay: A Microfluidics-Based Platform for Comprehensively Characterizing Biomechanical Thrombogenesis
Published on: January 9, 2026
A human-cell recombinant prethrombin-2 platform producing thrombin with enhanced fibrinogen processing for in vitro
Hadeel Swaid1, Soraia R Mendes2, Pablo Fuentes-Prior3
1Proteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona (IBMB), Higher Scientific Research Council (CSIC), Barcelona Science Park, 08028 Barcelona, Catalonia, Spain; Graduate Program in Biotechnology, Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028 Barcelona, Catalonia, Spain.
Abstract:
Thrombin is a central mediator of haemostasis, immune responses, and inflammation. It arises from prothrombin upon prothrombinase cleavage at R320-I321, which triggers the allosteric maturation typical of chymotrypsin-like serine peptidases. Further processing yields the physiologically dominant α-thrombin (αT), whose competent active site centres on catalytic S525. Despite widespread biomedical and biotechnological use, plasma-derived αT is heterogeneous and risks pathogen or prion transmission, motivating recombinant alternatives. These have largely relied on suboptimal bacterial or non-human eukaryotic systems, with human-cell efforts focused mainly on prothrombin or engineered variants. Here, we report the recombinant production in Expi293F cells of prethrombin-2 (PE2), a zymogen retaining 13 residues upstream of αT, alongside its catalytically-impaired S525A counterpart (PE2-S525A). Controlled in vitro maturation was achieved with a matched recombinant system for ecarin, a snake-venom metallopeptidase cleaving R320-I321, which yielded active PE2a and inactive PE2a-S525A. PE2a exhibited thermal stability, cleavage activity against the chromogenic substrate S-2238, and performance in thrombin-time assays comparable to those of commercial human αT. By contrast, it cleaved the physiological substrate fibrinogen, including its fluorescein-labelled form, more efficiently. Fresh PE2a slowly underwent autolysis at R284-T285, yielding αT after one week. The direct thrombin inhibitors argatroban and dabigatran further enhanced thermal stability while efficiently blocking substrate cleavage. This fully recombinant workflow provides a practical platform for basic haematological research, structural biology, and inhibitor screening in vitro.
