Related Experiment Video
Updated: Oct 11, 2026

Generating Strictly Controlled Stimuli for Figure Recognition Experiments
Published on: March 18, 2019
Tree Rearrangement Graphs Admit Paths of Decreasing Robinson-Foulds Distance
Lena Collienne1,2, Frederick A Matsen Iv3,4,5,6
1School of Computing, University of Otago, Dunedin, Otago, New Zealand. lena@lenacoll.de.
Abstract:
Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on them, however, is often intractable, so the efficiently computable Robinson-Foulds (RF) distance is used in practice. We investigate how the RF distance behaves along paths in the NNI and SPR graphs, where trees are nodes and edges represent single rearrangements. We show that any two trees are connected by a path along which the RF distance to the target decreases monotonically in the NNI graph and strictly in the SPR graph; we also show that a strictly decreasing NNI path does not always exist.
Related Concept Videos
Graphs of Two-Variable Functions
Graphical Representation of Inequalities
Woodward–Hoffmann Selection Rules and Microscopic Reversibility
Graphs of Equations in Two Variables
Graphs of Functions
Green’s Theorem
