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Updated: Oct 13, 2026

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
Published on: August 21, 2019
Optical Characterization of Gram-Positive and Gram-Negative Biofilms Using Swept-Source Optical Coherence Tomography
Nafisa Sultana1, Abhishek Banerjee1, Priyank Saxena2
1Biophotonics Lab, Department of Bioengineering & Biotechnology, Birla Institute of Technology-Mesra, Ranchi, India.
Abstract:
Biofilms are microbial communities enclosed in a matrix that increases antibiotic tolerance and underlies persistent device-associated infections, making label-free, non-destructive characterization important. Established differences in cell-wall structure between Gram-positive and Gram-negative bacteria are expected to alter light scattering, motivating the hypothesis that the two groups differ in optical attenuation. This proof-of-concept study tested that optical prediction using optical coherence tomography. The optical attenuation coefficient was extracted from cross-sectional images. Gram-positive biofilms showed higher attenuation than Gram-negative biofilms, with every cross-group comparison significant, while species within each group were statistically indistinguishable, indicating a Gram-level descriptor. Two deep-learning classifiers separated the groups with over 97% accuracy because the attenuation distributions overlap minimally; this demonstrates the feasibility of automation rather than a requirement for deep learning. The attenuation differences are consistent with the hypothesis presented in the study, suggesting that these structural differences may contribute to the observed optical contrast.
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