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From condensates to fibrils: polyphosphate-regulated phase separation of p53
Narendran Sekar1, Hema Chandra Kotamarthi2, Swathi Sudhakar1
1Department of Applied Mechanics and Biomedical Engineering, IIT Madras, India. swathi.s@iitm.ac.in.
Abstract:
Protein aggregation is widely associated with neurodegenerative disorders, but increasing evidence suggests that similar misfolding phenomena also contribute to cancer. Although p53 aggregation is commonly associated with oncogenic mutations, wild-type p53 can also misfold under cellular stress. Here, we show that the endogenous polyanion polyphosphate regulates the phase behaviour and aggregation of wild-type p53 in a pH-dependent manner. Using thioflavin T kinetics together with optical and electron microscopy, we demonstrate that acidic conditions promote polyphosphate-driven coacervation of p53, leading to the formation of multicoacervate condensates. These protein-rich condensates locally concentrate p53 and accelerate fibril nucleation and maturation into dense fibrillar networks. In contrast, at neutral pH, p53 remains soluble and non-amyloidogenic, consistent with the absence of phase separation. Together, our findings reveal a phase separation-assisted pathway for p53 fibrillization under acidic stress and highlight polyphosphate as an important regulator of p53 aggregation.