Related Experiment Video
Updated: Oct 15, 2026

Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Testing the Avrami-Dobrzyński model of cancer transformation using mutation-count clinical data across multiple
Julianna Krasowska1, Agata Fronczak2, Piotr Fronczak2
1Warsaw University of Technology Faculty of Physics, ul. Koszykowa 75, Warsaw, 00-662, Poland.
Background:
The Avrami-Dobrzyński (A-D) model interprets malignant transformation as a phase-transition-like process, mathematically equivalent to the Johnson-Mehl-Avrami-Kolmogorov (JMAK) equation from condensed-matter physics.In this framework, the cumulative probability of neoplastic transformation follows a Weibull-type sigmoidal function of the somatic mutation burden, parametrised by a shape constant a and a critical scaling exponent k. Purpose: To test the generalisability of the A-D model by fitting its cumulative distribution function to clinical mutation-count data spanning 24 cancer types, and to analyse meaning of its parameters across a heterogeneous patient population. Methods: Mutation-count data for 70 studies (24 tumour types, n ≥ 100 per study) were retrieved from cBioPortal. For each cohort, an empirical cumulative distribution P(m) was constructed from total non-synonymous mutation counts per sample. One-, two-, and three-component A-D mixture models (equivalent to Weibull mixture distributions) were fitted. Results: Single-component A-D fits adequately described a minority of cohorts; the majority exhibited a characteristic "knee" or wave-like inflection in the linearised representation, requiring two-or three-component mixture models. The scaling exponent k varied widely across and fell below unity in 37 of 136 fitted components, indicating a decreasing-hazard regime. The k-a parameter space showed systematic co-variation with mean mutation burden. Superposition of decreasing-and increasing-hazard components within individual tumour categories generated composite hazard profiles, reflecting coexisting subpopulations with distinct transformation dynamics. Conclusions:The A-D model provides a physically grounded description of mutation-driven cancer transformation across diverse tumour types. Deviations from single-component behaviour are consistent with genuine biological heterogeneity within nominal tumour categories. These findings support the broader applicability of phase-transition concepts in computational oncology and provide a quantitative framework for integrating genomic data into cancer risk modelling.
More Related Videos
10:27Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
08:46Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Related Concept Videos
Cancer
Cancers Originate from Somatic Mutations in a Single Cell
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Tumor Progression
Colon cancer is one of the best-documented examples of tumor progression. Early mutation in the APC gene in colon cells causes a small growth on the colon wall called a polyp. With time, this polyp grows into a benign, pre-cancerous tumor. Further...
Cancer Survival Analysis
Mouse Models of Cancer Study
The development of transgenic, knockout, and knock-in mice has led to an exponential increase in their use as model organisms in research,...