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Updated: Oct 17, 2026

Tandem High-pressure Freezing and Quick Freeze Substitution of Plant Tissues for Transmission Electron Microscopy
Published on: October 13, 2014
Sample preparation of some plant tissues for transmission electron microscopy using high pressure freezing and freeze
Chia-Mei Hsu1, Yi-Chia Chou1, Hsiao-Jung Yen1
1Institute of Plant and Microbial Biology, Academia Sinica, No. 128, Sec. 2, Academia Road, Nankang, Taipei, 11529, Taiwan.
Abstract:
For sample preparation of biological block sectioning, high pressure freezing and freeze substitution (HPF-FS) is a better choice than chemical fixation. Freezing fixation can retain the original structures and preserve the soluble materials, and avoid the disadvantage of chemical fixation. Using high-pressure freezing, plant tissues are more difficult to freeze successfully than animal tissues and microbes because they have cell walls and varying degrees of vacuolation. For plant tissues, including the roots of Arabidopsis thaliana, 1-hexadecene is an ideal cryoprotectant/filler. The ability of highly vacuolated plant tissues (such as mature leaves and petals) to effectively remove intercellular air is crucial for successful high pressure freezing. Using the anthers of Arabidopsis thaliana, the leaves of Brachypodium distachyon, Axonopus compressus and Plantago asiatica, and the petals of Phalaenopsis bellina as examples, we found an effective method to remove air from the intercellular spaces: plant tissue in 1-hexadecene is placed in a vacuum desiccator, and then the air is removed using a vacuum pump, resulting in the release of numerous air bubbles. Plant tissue samples taken at different degassing times are then subjected to high pressure freezing and the subsequent required procedures of sample preparation. Based on the presentation of fine structures, the optimal time for different plant tissues can be determined and shows a positive correction with sample thickness. Good HPF-FS results show that the lipid bilayer within each organelle of the plant cells is clearly visible.
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Preparation of Samples for Electron Microscopy
Fixation and Sectioning
The simplest type of preparation is the wet mount, in which the specimen is placed in a drop of liquid on the slide. A liquid specimen can be directly deposited on the slide using a dropper. Solid specimens, such as skin scraping, can be placed on the slide before adding a drop of liquid to prepare the wet mount. Sometimes the liquid is simply water, but stains are often added...
Cryo-electron Microscopy