Related Experiment Video
Updated: Oct 22, 2026

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo
Published on: May 4, 2018
runner 2.0: A software suite for high-dimensional neural network potentials
Alexander L M Knoll1,2, Moritz R Schäfer1,2, K Nikolas Lausch1,2
1Lehrstuhl für Theoretische Chemie II, Ruhr-Universität Bochum, 44780 Bochum, Germany.
Abstract:
We present runner 2.0, the "Ruhr University Neural Network energy representation," a highly optimized software suite for training and evaluating high-dimensional neural network potentials (HDNNPs) of the second, third, and fourth generations. Long-range electrostatics and charge equilibration (QEq) for the description of non-local charge transfer in fourth-generation (4G) HDNNPs are accelerated by quasi-linear-scaling plane wave methods, reducing QEq computational complexity from O(N3) to O(Nlog2N) such that linear or quasi-linear scaling is achieved across all HDNNP generations. An optimized memory management strategy eliminates the training overhead traditionally associated with long-range interactions, allowing 4G-HDNNPs to be trained with the same efficiency as their local counterparts. Developed in modern Fortran (2003/2008 standards), combined with a hybrid Message Passing Interface (MPI)/Open Multi-Processing (OpenMP) parallelization scheme, runner 2.0 has been designed to run efficiently in any central processing unit (CPU) environment, from cost-effective local workstations to massive high-performance computing (HPC) clusters. Its modular library architecture facilitates straightforward binding to external simulation software; native interfaces to the Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) and the atomic simulation environment (ASE) provide full access to all its features, including built-in committee-based uncertainty quantification. The high efficiency and scalability of the runner 2.0 ecosystem are demonstrated through detailed benchmarks.
Related Concept Videos
Neural Circuits
Neuronal pools are collections of nerve cells with similar functions and interact through chemical and electrical signals. These pools include both interneurons (the central neural circuit nodes that...
Regression Toward the Mean
Multi-input and Multi-variable systems
In the absence of...
Maximizing the Directional Derivative
Gradient Vectors and Their Applications
Wald-Wolfowitz Runs Test II
For binary data, runs are identified using symbols such as + and −, or equivalently, 1s and 0s. In...
