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Published on: September 12, 2018
AbSynth: A Century of Total Syntheses as a Machine-Readable Resource for Analyzing Strategic Logic in Organic
Maciej Czuba1, Konrad Barnowski1, Karol Molga2
11904 Undergraduate Chemistry Club at the Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, Kraków30-387, Poland.
Abstract:
The design of synthetic routes to complex, stereochemically rich targets remains one of the most demanding challenges in organic chemistry. To interrogate the strategic logic underlying such efforts, we curated and digitized over 3,000 classical total syntheses comprising close to 60,000 individual steps, now freely available as the AbSynth collection. Analyses across this data set reveal that synthesis planning cannot be reduced to purely local, one-step-at-a-time decision-making: known complexity metrics and scoring functions fail to vary monotonically along synthetic trajectories, and conventional bond-disconnection heuristics apply only sporadically and lack the specificity required for automation. Instead, our study shows that nearly half of all steps correspond to structurally unproductive - yet strategically essential - plateaus of skeletal complexity. Navigating these plateaus requires retrosynthetic algorithms to embrace multistep reasoning rather than incremental scoring. We identify several such multistep heuristics, including tolerable lengths of nonskeletal disconnections and the "longevity" of functional groups across routes, and anticipate that AbSynth will serve as a resource for uncovering additional trends in synthesis design. By providing a century-spanning, machine-readable data set of complete routes, this work offers a foundation for advancing chemical AI toward the complexity of human expert planning.
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