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Updated: Oct 28, 2026

Monitoring Activation of the Antiviral Pattern Recognition Receptors RIG-I And PKR By Limited Protease Digestion and Native PAGE
Published on: July 29, 2014
SIR2-mediated filament assembly activates the NLR-like protein Avs5 for bacterial antiviral defense
Chen Wang1, Jiale Xie1, Zhangfei Shen2
1Department of Pathology, University of Massachusetts Chan Medical School, 368 Plantation Street, Worcester, MA 01605, USA; RNA Therapeutics Institute, University of Massachusetts Chan Medical School, 368 Plantation Street, Worcester, MA 01605, USA; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, 368 Plantation Street, Worcester, MA 01605, USA.
Abstract:
Like mammalian nucleotide-binding and oligomerization domain receptors (NLRs), bacterial NLR-like proteins mediate antiviral defense. Avs5, a representative of a large family of short bacterial NLR-like proteins, contains an N-terminal SIR2 effector, a central nucleotide-binding domain (NBD), and a C-terminal sensor domain. Whereas canonical inflammasome NLRs use NBD oligomerization to nucleate effector-domain filaments, Avs5 forms SIR2-mediated filaments that couple receptor assembly to NADase activation. In the resting state, ATP-bound Avs5 is monomeric and subsequently forms a SIR2-mediated dimer that likely represents an intermediate in a stepwise activation pathway. Upon activation, ATP-dependent conformational remodeling of the NBD promotes conversion of these dimers into active filaments. Structure-guided mutagenesis, biochemical assays, and functional analyses show that filament assembly is required for efficient NAD+ hydrolysis and antiphage defense. These findings reveal an effector-driven activation mechanism and extend the principles by which NLR proteins couple higher-order assembly to immune defense across domains of life.
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