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Updated: Oct 28, 2026

Laser-scanning Photostimulation of Optogenetically Targeted Forebrain Circuits
Published on: December 27, 2013
Open source laser-scanning photostimulation for neuroscience with Zapit
Michael Lohse1, Oliver M Gauld1, Maja T Quigley1,2
1Sainsbury Wellcome Centre, UCL, London, United Kingdom.
Abstract:
Optogenetic tools are indispensable for understanding the causal neural mechanisms underlying animal behavior, providing millisecond-precision control over genetically defined neural populations. Random-access laser-scanning optogenetics is a powerful and underutilized method for transiently manipulating cortical activity in mice. Despite the utility of this technique, no general-purpose open-source implementation currently exists, and potential users need expertise across optics, real-time hardware control, and programming. This represents a major barrier to adoption, particularly for newly established research groups. Here we present 'Zapit', the first open-source general-purpose platform for random-access laser-scanning optogenetic experiments in head-fixed mice. Zapit is fully documented, has a user-friendly GUI, works in stereotaxic coordinates, and comes with easy-to-build hardware options that extend functionality beyond any published system. We validate Zapit's performance through electrophysiological recordings and cortical photoinhibition in behaving mice. Zapit is a novel and innovative tool with the potential to democratize laser-scanning optogenetics and significantly increase uptake throughout the scientific community.

