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Updated: Oct 28, 2026

Profiling of Surface Protein Epitopes on Viral Particles by Multiplex Dual-Reporter Strategy
Published on: January 12, 2024
Divergent Functional Checkpoints Determine Epitope-Specific ADE Outcomes of SARS-CoV-2 Entry
Yuru Han1, Qianqian Zhang1, Yidan Gao1
1Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), Shanghai Institute of Infectious Disease and Biosecurity, Qidong-Fudan Innovative Institution of Medical Sciences, Shanghai Frontiers Science Center of Pathogenic Microorganisms and Infection, Shanghai Fifth People's Hospital & School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai 200032, China.
Abstract:
Accumulating in vitro evidence indicates that certain antibodies promote Fcγ receptor (FcγR)-dependent entry of SARS-CoV-2 into immune cells, and that the magnitude of antibody-dependent enhancement (ADE) is strongly dictated by epitope specificity. However, the mechanistic basis underlying epitope-specific ADE outcomes remains poorly understood. Here, we systematically evaluated ADE of SARS-CoV-2 entry mediated by a panel of 40 monoclonal antibodies (mAbs) targeting major antigenic regions of the spike (S) protein. Using a stepwise functional framework, we assessed antibody performance across successive stages of the FcγR-dependent viral entry pathway, including spike binding, cell-surface attachment, internalization, and membrane fusion. Although all mAbs exhibited strong binding to the S protein, their ability to support subsequent steps varied markedly by epitope. Specifically, receptor-binding domain (RBD) class I- and S2-targeting mAbs failed to support cell-surface attachment; RBD class IV-targeting mAbs and a subset of N-terminal domain (NTD)-targeting mAbs supported attachment but not internalization; and mAbs targeting a specific sub-epitope within RBD class III supported both attachment and internalization but failed to promote membrane fusion. Consequently, antibodies stalling at any of these checkpoints displayed an ADE-negative phenotype. In contrast, antibodies targeting the identified ADE-positive epitopes (RBD class II, certain NTD, and specific RBD class III sub-epitope) successfully fulfilled the functional requirements at each stage of the entry pathway. Importantly, authentic SARS-CoV-2 experiments confirmed the epitope-specific pattern of viral entry enhancement. These findings establish that divergent functional checkpoints causally determine epitope-specific ADE outcomes, providing a mechanistic framework that directly informs the design of safer therapeutic antibodies and vaccines.
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