Related Experiment Videos
TransSurv: compatibility-aware transfer learning for target-cohort survival prediction
Zheng Qu1, Hongzhe Zhang2, Katherine L Nathanson3
1Department of Breast Surgical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, 17 Panjiayuan Nanli, Chaoyang District, Beijing 100021, China.
Abstract:
Transcriptomic prognostic models are most useful for narrowly specified, event-limited target populations such as clinical-trial cohorts or stage-defined subtypes. Candidate auxiliary cohorts may carry related prognostic information but differ in disease context, assay platform, and population structure, so naive pooling-and transfer learning without compatibility screening-can erode target-cohort discrimination. We present TransSurv, a target-centered transfer-learning framework for high-dimensional Cox modeling that screens candidate auxiliary cohorts for empirical compatibility before borrowing, comes with non-asymptotic guarantees, and reports which auxiliary cohorts contributed. In the JAVELIN Renal 101 metastatic renal cell carcinoma trial-to our knowledge, the first transfer-learning survival evaluation with a randomized trial as the target-TransSurv raised held-out progression-free survival discrimination. It also achieved the highest mean discrimination in all five clinically defined target cohorts (kidney, ovarian, cervical, lung, breast) from The Cancer Genome Atlas (TCGA) and improved recurrence prediction in a cross-platform, cross-population Fudan University Shanghai Cancer Center triple-negative breast cancer analysis using TCGA and METABRIC auxiliaries.
Related Concept Videos
Improving Translational Accuracy
Improving Translational Accuracy
Cancer Survival Analysis
Truncation in Survival Analysis
Left truncation occurs when individuals who experienced the event of interest before a certain time are not included in the study. This is often due to a "delayed entry" into the study where only those who survive until a certain entry point are observed.
Assumptions of Survival Analysis
Comparing the Survival Analysis of Two or More Groups