Explainable machine learning integrating CT-derived intratumoral heterogeneity for histological subtype prediction in...

Preoperative differentiation of lepidic-predominant adenocarcinoma from other histological subtypes in lung adenocarcinoma presenting as pure ground-glass nodules remains challenging. We evaluated whether a CT-derived intratumoral heterogeneity score provides complementary predictive and biological information beyond routine clinical and CT features.

This retrospective multicenter study included 533 patients, divided into a training cohort (n = 373) and a held-out validation cohort (n = 160). Twelve supervised algorithms were compared exclusively within the training cohort using stratified five-fold cross-validation and grid-search optimization; predictors, hyperparameters, and the decision threshold were locked before the held-out cohort was evaluated once. Incremental value of the ITH score and leave-one-center-out internal-external validation were additionally assessed. Segmentation reproducibility was evaluated in 100 lesions. An independent radiogenomic cohort of 43 pathological Tis/T1 lung adenocarcinomas was analyzed by differential-expression and Hallmark gene-set enrichment analyses after median ITH-score stratification.

XGBoost achieved the highest training-set cross-validation AUC (0.908 ± 0.021) and was selected before held-out evaluation. In the validation cohort, the AUC was 0.919 (95% CI, 0.870-0.968), with accuracy 0.850, precision 0.857, sensitivity 0.545, specificity 0.966, and Brier score 0.098. Adding the ITH score to clinical and CT features increased AUC from 0.867 to 0.919 (ΔAUC = 0.052; DeLong P = 0.012), increased PR-AUC from 0.731 to 0.824, and reduced Brier score from 0.126 to 0.098. Leave-one-center-out AUCs ranged from 0.824 to 0.882. The ITH score showed good-to-excellent repeat-segmentation reproducibility. In the radiogenomic cohort, a high ITH score was associated with coordinated enrichment of G2M checkpoint (NES = 1.86, FDR <0.001), E2F targets (NES = 1.86, FDR <0.001), and epithelial-mesenchymal transition (NES = 1.55, FDR = 0.001).

CT-derived ITH provided incremental information for histological subtype prediction and was associated with proliferation-, cell-cycle-, and EMT-related transcriptional programs. The moderate sensitivity at the prespecified operating point and the retrospective design warrant prospective external validation before clinical implementation.