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Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
Published on: August 20, 2021
Whole-genome sequence of an ammonia-nitrogen-degrading Stutzerimonas kunmingensis strain JD1-4
Jinyang Zhang1,2, Xin Liao1, Yeshi Yin2,3
1Guangxi Academy of Marine Sciences, Guangxi Mangrove Research Center, Guangxi Key Lab of Mangrove Conservation and Utilization, Beihai, China.
Abstract:
The genome of the ammonia-degrading bacterium Stutzerimonas kunmingensis JD1-4, isolated from mangrove sediment in Guangxi, was sequenced using PacBio Sequel II and Illumina NovaSeq 6000 platforms, yielding a single 4,852,889 bp chromosome without plasmids. Annotation identified 42 nitrogen metabolism genes, providing the genetic basis for its ammonia-degrading capability.
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