Support Vector Machine (SVM)-Based Review of RNA-RNA Interaction Prediction Methods
Related Experiment Video
Updated: Oct 31, 2026

Computational Analysis Tutorial for Chimeric Small Noncoding RNA: Target RNA Sequencing Libraries
Published on: December 1, 2023
Karunya Ramaraju Venkat1, Swetha Varadarajan2
1Department of Computer Science, SASTRA University, Thanjavur, Tirumalaisamudram, India. rvrkaruv@gmail.com.
Abstract:
RNA-RNA interactions (RRIs) play a vital role in cellular processes including gene regulation, RNA editing, and translational control. Aberrant RRIs are increasingly recognized as contributors to cancer initiation, progression, and metastasis. Accurate computational prediction of RRIs therefore offers significant opportunities for cancer biomarker discovery, understanding tumor biology, and therapeutic target identification. Among machine learning approaches, support vector machines (SVMs) have been applied in RRI prediction due to their robustness in handling high-dimensional, nonlinear data and relatively small training datasets. This chapter reviews SVM-based methods for RRI prediction, highlights representative tools and strategies, and discusses current challenges and relevance to cancer application. Emerging trends that integrate SVMs with deep learning and experimental data augmentation are also outlined, pointing toward pathways for clinical translation.
Related Concept Videos
RNA-seq
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while microarray-based...
RNA Interference
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
RNA Interference
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
RNA Structure
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Stability
RNA Stability

