Acid-induced conformational remodeling of arachin bidirectionally modulates aflatoxin B1 binding: a multi-spectroscopic and molecular simulation study
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Updated: Nov 5, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Mohan Li1, Jiahao Yuan1, Dian Zhou2
1College of Food Science, Southwest University, No. 2 Tiansheng Road, Beibei, Chongqing 400715, PR China; China-Hungary Belt and Road Joint Laboratory on Food Science, Chongqing 400715, PR China; Chinese-Hungarian Cooperative Research Centre for Food Science, Chongqing 400715, PR China; Chongqing Key Laboratory of Specialty Food Co-built by Sichuan and Chongqing, Chongqing 400715, PR China.
Abstract:
Arachin (Ara), the major storage protein in peanuts, is considered a critical bottleneck limiting the accurate detection and effective detoxification of aflatoxin B1 (AFB1) due to its strong binding affinity for this mycotoxin. However, the structure-activity relationship governing Ara-AFB1 interactions and its response to environmental factors remain poorly understood. In this study, we systematically investigated how acid treatment (pH 3.0 or 5.0) followed by neutralization to pH 8.0 alters the conformation of Ara and consequently affects its binding behavior toward AFB1. Multi-spectroscopy and molecular simulations revealed that pH 5.0 treatment followed by neutralization induced partial unfolding, increased α-helix content relative to native Ara, and exposed additional hydrophobic sites, resulting in enhanced AFB1 binding affinity. In contrast, pH 3.0 treatment caused dissociation that was not reversed upon neutralization, accompanied by extensive α-helix loss, a marked increase in random coil content, and hydrophobic core disruption, leading to decreased AFB1 binding capacity. Notably, AFB1 may be physically entrapped within acid-induced protein aggregates, which may contribute to the increased difficulty of detection and detoxification. Our findings reveal, for the first time, a bidirectional regulatory mechanism by which pH-driven conformational remodeling of Ara modulates AFB1 binding in opposite directions depending on acid intensity. This work provides mechanistic insights into matrix-associated mycotoxin behavior and offers theoretical support for AFB1 risk management in food processing environments.
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