Related Experiment Video
Updated: Aug 13, 2026

10:32
On-chip Isotachophoresis for Separation of Ions and Purification of Nucleic Acids
Published on: March 2, 2012
Application of fingerprinting techniques to iodinated nucleic acids
Summary
Iodination is a reliable method for labeling nucleic acids like RNA and DNA for fingerprinting and sequencing. This technique, which labels cytidine residues, preserves the integrity and specificity of the genetic material.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Nucleic acid fingerprinting and sequencing are crucial for genetic analysis.
- Radioactive labeling is a common technique for studying nucleic acids.
- The development of efficient and non-disruptive labeling methods is essential.
Purpose of the Study:
- To evaluate the utility of iodine-125 ((125)I) labeling for RNA and DNA fingerprinting and sequencing.
- To determine if (125)I labeling affects the structural integrity or enzymatic specificity of nucleic acids.
Main Methods:
- Application of (125)I labeling techniques to human 5S RNA and bacteriophage f2 RNA.
- Analysis of RNA and DNA fingerprints and sequences post-labeling.
- Assessment of the impact of iodination on enzyme specificity (ribonucleases and deoxyribonucleases).
Main Results:
- Fingerprints of iodinated human 5S RNA and bacteriophage f2 RNA were comparable to non-iodinated controls in complexity and pattern.
- (125)I labeling primarily targets cytidine residues.
- The iodination method demonstrated robustness, yielding stable and reproducible oligonucleotide products without significantly altering enzyme specificity.
Conclusions:
- Iodine-125 labeling is a versatile and effective general procedure for preparing nucleic acids for fingerprinting and sequencing.
- The method is minimally sensitive to secondary structures in single-stranded RNA.
- This labeling technique preserves the biological and chemical characteristics of nucleic acids, making it suitable for various molecular analyses.
Related Concept Videos
Labeling DNA Probes
DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Southern Blot
Agarose gel electrophoresis is very useful in separating DNA fragments by size. Running a DNA ladder containing fragments of the known length alongside the sample helps determine the approximate length of the sample DNA fragments. However, additional steps are needed to verify the sequence identity of the sample DNA fragments.
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...
FISH - Fluorescent In-situ Hybridization
Fluorescence in situ hybridization, or FISH, was developed in the early 1980s and has quickly become one of the most widely used techniques in cytogenetics. Labeled probes are used to bind complementary DNA or RNA sequences on a chromosome or in a region within a cell. Earlier, the probes could only be obtained by cloning or reverse transcription of a DNA template. Currently, the probe oligonucleotides can be synthesized synthetically. Additionally, with the advancement of optical techniques,...
IR Frequency Region: Fingerprint Region
IR spectra are divided into two main regions: the diagnostic region and the fingerprint region. The diagnostic region of the spectrum lies above 1500 cm−1. The absorptions resulting from single-bond vibrations of the N–H, C–H, and O–H stretch at higher wavenumbers and appear on the left side of the spectrum. The stretching absorptions of the C≡C and C≡N occur between 2100–2300 cm−1. In contrast, those arising from stretching absorptions of the C=O, C=N, and C=C occur between 1600–1850 cm−1.
The...
The...

