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Updated: Aug 11, 2026

A Novel Saturation Mutagenesis Approach: Single Step Characterization of Regulatory Protein Binding Sites in RNA Using Phosphorothioates
Published on: August 21, 2018
In vitro mutagenesis of a putative DNA binding domain of SV40 large-T
Abstract:
A large number of deletion and point mutations were introduced into a small region of the SV40 large-T gene that was believed to encode part of a DNA-binding domain. The majority of mutant proteins constructed were unable to stimulate viral DNA replication, but all retained at least some transforming activity. Those replication-defective mutants with lesions affecting amino acid residues between 144 and 156 were postulated also to be defective in the autoregulation function of large-T to account for their ability to transform Rat-1 cells more avidly than wild-type. Two mutants (Glu 107----Lys and Ser 189----Asn) were isolated which exhibited severely reduced transforming activity but which supported normal rates of virus and viral DNA replication. Mutation of individual serine and threonine phosphorylation sites within the amino-terminal half of large-T had little effect on the protein's transforming activity. These and other mutations that affected amino acid residues either side of the region from 127 to 133, previously shown to be essential to the nuclear localisation of large-T [D. Kalderon, W. D. Richardson, A. F. Markham, and A. E. Smith (1984) Nature (London) 311, 33-38] did not discernibly impair nuclear accumulation.
Insights
Mutations in the SV40 large-T gene affect viral DNA replication and cell transformation. Specific mutations impairing DNA binding also enhance transforming activity by disrupting autoregulation.
Area of Science:
- Molecular Biology
- Virology
- Genetics
Background:
- The SV40 large-T antigen is crucial for viral DNA replication and cellular transformation.
- A specific region of large-T was hypothesized to contain a DNA-binding domain essential for its functions.
Purpose of the Study:
- To investigate the role of a specific region in the SV40 large-T gene in DNA binding, viral replication, and cell transformation.
- To identify key amino acid residues responsible for large-T's autoregulation and transforming activities.
Main Methods:
- Introduction of numerous deletion and point mutations into a targeted region of the SV40 large-T gene.
- Assays to evaluate the effects of mutant proteins on viral DNA replication and cell transformation (e.g., Rat-1 cells).
- Analysis of mutant protein localization within the cell nucleus.
Main Results:
- Most mutants lost the ability to stimulate viral DNA replication but retained transforming activity.
- Replication-defective mutants with lesions between amino acids 144-156 showed enhanced transforming activity, suggesting impaired autoregulation.
- Two mutants (Glu 107----Lys, Ser 189----Asn) had reduced transforming activity but normal replication rates.
- Phosphorylation site mutations and mutations outside the nuclear localization region did not significantly impair nuclear accumulation or transforming activity.
Conclusions:
- The studied region of SV40 large-T is critical for viral DNA replication, with specific residues involved in autoregulation.
- Disruption of autoregulation can enhance the transforming potential of large-T.
- Nuclear localization is separable from replication and transformation functions for certain large-T mutations.
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