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Updated: Sep 23, 2026

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells
Published on: April 4, 2016
Is there left-handed DNA at the ends of yeast chromosomes?
Abstract:
Tracts of the alternating copolymer poly(dGdT . dCdA) have been observed in a variety of eukaryotes. Such tracts are of particular interest since homopolymers of this sequence can exist in vitro as left-handed Z form DNA. We have found that the yeast Saccharomyces cerevisiae contains at least 30 poly(GT) tracts at dispersed genomic locations. We show here that one subset of these tracts is located at the ends (telomeres) of the yeast chromosome. In addition, we show that poly(dGdT . dCdA) tracts are added to the ends of the extrachromosomal ribosomal DNA molecules of Tetrahymena when cloned in yeast. These data represent the first reported association between a homopolymeric sequence and a chromosome structure.
Insights
Poly(GT) tracts, known for forming Z-DNA, are found in yeast chromosomes. This study reveals these sequences are located at telomeres, chromosome ends, and are added to extrachromosomal DNA in yeast.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Alternating copolymer poly(dGdT . dCdA) tracts are found in eukaryotes.
- These sequences can form left-handed Z-form DNA in vitro.
- The yeast Saccharomyces cerevisiae possesses numerous poly(GT) tracts.
Purpose of the Study:
- To investigate the genomic locations of poly(GT) tracts in yeast.
- To determine if these tracts are associated with specific chromosomal structures.
- To explore the role of poly(dGdT . dCdA) in yeast extrachromosomal DNA.
Main Methods:
- Genomic analysis in Saccharomyces cerevisiae.
- Identification and mapping of poly(GT) tracts.
- Cloning and characterization of Tetrahymena extrachromosomal DNA in yeast.
Main Results:
- At least 30 poly(GT) tracts were identified in the yeast genome.
- A subset of these poly(GT) tracts was found at yeast chromosome telomeres.
- Poly(dGdT . dCdA) tracts were observed to be added to the ends of Tetrahymena rDNA in yeast.
Conclusions:
- Poly(GT) tracts are associated with yeast telomeres.
- This represents the first reported link between homopolymeric sequences and chromosome structure.
- The findings suggest a role for these tracts in telomere biology or DNA processing in yeast.
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