Controlled uracil incorporation into bacteriophage DNA increases recombination frequencies. Uracil residues are lethal to phages but stimulate recombination, with excision repair playing a key role.
Area of Science:
Molecular Biology
Genetics
Biochemistry
Background:
Deoxyribonucleic acid (DNA) normally contains thymine, but uracil can be incorporated under specific conditions.
The presence of uracil in DNA can impact DNA replication, repair, and recombination processes.
Bacteriophages, such as lambda phage, are valuable model systems for studying DNA metabolism.
Purpose of the Study:
To investigate the controlled incorporation of uracil into lambda bacteriophage DNA.
To determine the biological consequences of uracil substitution for thymine on phage viability and recombination.
To elucidate the role of DNA repair pathways in processing uracil-containing DNA.
Main Methods:
Bacterial mutants (dut ung thy) of Escherichia coli were used to grow lambda bacteriophages with incorporated uracil.
Alkaline sucrose sedimentation and uracil DNA glycosylase treatment were employed to quantify uracil incorporation.
Phage plating efficiency assays on wild-type and mutant bacteria assessed uracil's impact on viability.
Recombination frequencies were measured using lambda tandem duplication phages in repressed infections, with genetic analysis of recombination-deficient mutants (recA, recB, xth).
Main Results:
Uracil substitution for thymine in phage DNA ranged from 0.17% to 1.9%.
Uracil incorporation reduced phage plating efficiency, with a lethality probability of approximately 1% per uracil residue.
Uracil-containing phages exhibited 5 to 10 times higher recombination frequencies compared to controls.
Uracil-stimulated recombination was dependent on RecA and RecB proteins and significantly enhanced in xth mutants, suggesting a role for excision repair.
Conclusions:
Controlled uracil incorporation into bacteriophage DNA is feasible and impacts phage biology.
Uracil acts as a mutagenic lesion, reducing viability but also stimulating recombination.
Excision repair pathways are crucial for processing uracil in DNA and influence uracil-mediated recombination.
This study provides insights into DNA repair mechanisms and the consequences of base modification in viral genomes.