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Updated: Aug 15, 2026

Application of an In vitro DNA Protection Assay to Visualize Stress Mediation Properties of the Dps Protein
Published on: May 31, 2013
[Binding of ions of trivalent iron with DNA]
Abstract:
The DNA helix-coil transition in nonbuffer solutions of Fe(NO3)3 was studied. Calculation of the ionic equilibrium indicated that in these solutions iron exists in the form of mono-, bi- or trivalent hydroxide, the formation of which decreases pH. A component of the DNA thermal stability variation associated with DNA binding to iron ions was calculated. An increase in the iron contents produces an increase in the melting range which was determined by a rise in the melting end temperature when binding the ions with phosphates and a drop in the melting beginning temperature when binding to DNA bases. A main contribution to the former effect is made by [Fe2(OH)3]3+ ions and to the latter effect by [FeOH]2+ ions. The constants of ion binding are higher for bases than for phosphates. Differential UV spectra of native and denatured DNA due to iron ions were measured. Calculations of conformation and coordination components of these spectra show that G-C pairs are one of the possible sites of iron ion binding with DNA.
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EDTA: Chemistry and Properties

