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The Ribosomal Database Project
B L Maidak1, N Larsen, M J McCaughey
1Department of Microbiology, University of Illinois, Urbana 61801.
Nucleic Acids Research
|September 1, 1994
Summary
The Ribosomal Database Project (RDP) provides curated ribosome data and analysis tools. It offers rRNA sequence alignments, phylogenetic trees, and software for researchers studying ribosomal RNA.
Area of Science:
- Microbiology
- Bioinformatics
- Molecular Biology
Background:
- The Ribosomal Database Project (RDP) is a vital resource for researchers studying ribosomal RNA (rRNA).
- Access to curated rRNA data, phylogenetic analyses, and specialized software is crucial for understanding microbial diversity and evolution.
Purpose of the Study:
- To provide a comprehensive, curated database of ribosome-related information.
- To offer advanced analysis services and software for ribosomal RNA sequence data.
Main Methods:
- Curated collection and organization of ribosomal RNA sequences.
- Development of phylogenetic analysis tools, including sequence alignment and tree construction.
- Implementation of an electronic mail server for automated data analysis and query services.
Main Results:
- The RDP offers phylogenetically ordered alignments of rRNA sequences.
- Derived phylogenetic trees and rRNA secondary structure diagrams are available.
- Specialized software facilitates the handling, analysis, and visualization of rRNA data.
Conclusions:
- The RDP serves as a centralized hub for ribosome research.
- Accessible data and analysis tools empower researchers in fields like microbial ecology and evolution.
- Continued curation and service provision by the RDP support advancements in rRNA-based studies.