Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Search research articles

Related Experiment Videos

Site-specific dynamics in DNA: theory

B H Robinson¹, G P Drobny

¹Department of Chemistry, University of Washington, Seattle 98195, USA.

Annual Review of Biophysics and Biomolecular Structure

|January 1, 1995

Summary

This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by

Same author

Cadmium uptake by onions, lettuce and spinach in New Zealand: Implications for management to meet regulatory limits.

The Science of the total environment·2019

Same author

Biowastes to augment the essential oil production of Leptospermum scoparium and Kunzea robusta in low-fertility soil.

Plant physiology and biochemistry : PPB·2019

Same author

The potential of L. scoparium, K. robusta and P. radiata to mitigate N-losses in silvopastural systems.

Environmental pollution (Barking, Essex : 1987)·2017

Same author

Response of Leptospermum scoparium, Kunzea robusta and Pinus radiata to contrasting biowastes.

The Science of the total environment·2017

Same author

Production of Biomass Crops Using Biowastes on Low-Fertility Soil: 1. Influence of Biowastes on Plant and Soil Quality.

Journal of environmental quality·2016

Same author

Production of Biomass Crops Using Biowastes on Low-Fertility Soil: 2. Effect of Biowastes on Nitrogen Transformation Processes.

Journal of environmental quality·2016

Same journal

Regulation of actin filament assembly by Arp2/3 complex and formins.

Annual review of biophysics and biomolecular structure·2007

Same journal

Living with noisy genes: how cells function reliably with inherent variability in gene expression.

Annual review of biophysics and biomolecular structure·2007

Same journal

Physics of proteins.

Annual review of biophysics and biomolecular structure·2007

Same journal

Fluorescence correlation spectroscopy: novel variations of an established technique.

Annual review of biophysics and biomolecular structure·2007

Same journal

Structural mechanisms underlying posttranslational modification by ubiquitin-like proteins.

Annual review of biophysics and biomolecular structure·2007

Same journal

From "simple" DNA-protein interactions to the macromolecular machines of gene expression.

Annual review of biophysics and biomolecular structure·2007

See all related articles

This review covers recent advances in duplex DNA dynamics, detailing models like the weakly bending rod and numerical methods. It explores magnetic resonance relaxation principles and computational techniques for analyzing molecular motion.

Area of Science:

Biophysics
Molecular Biology
Computational Chemistry

Background:

Understanding DNA dynamics is crucial for molecular biology.
Recent advancements have improved our ability to study these dynamics.

Purpose of the Study:

To review recent progress in duplex DNA dynamics.
To compare different theoretical models and computational methods.

Main Methods:

Description of the weakly bending rod model.
Discussion of numerical trajectory methods.
Review of magnetic resonance relaxation principles and computational approaches.

Main Results:

Comparison of model-based and model-free formulations of DNA dynamics.

Related Experiment Videos

Explanation of how molecular motions influence relaxation rates.

Analysis of computational methods like the stochastic Liouville equation and Redfield relaxation matrix.

Conclusions:

The time scale of dynamics significantly impacts computational method implementation.
Irreducible tensor basis sets are useful for developing relaxation process expressions.