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Iterative Optimization of DNA Duplexes for Crystallization of SeqA-DNA Complexes
Published on: November 1, 2012
The sequence of the Haemophilus influenzae mutB gene indicates it encodes a DNA helicase II-like protein
R B Walter1, K A Morton, J H Stuy
1Department of Biology, Southwest Texas State University, San Marcos 78666.
Abstract:
A 6.2-kb Haemophilus influenzae genomic DNA fragment which partially complemented both the mutator and ultraviolet light sensitive (UVs) phenotypes of the H. influenzae mutB1 mutant was isolated. This fragment was also able to complement the UVs phenotype of Escherichia coli uvrD mutant hosts. The uvrD+ gene complemented the mutator phenotype of mutB1 hosts. The nucleotide (nt) sequence of the 6.2-kb fragment revealed an open reading frame (ORF) of 2184 bp. This ORF shows similarity at both the nt and amino acid (aa) levels with the uvrD gene of E. coli. Comparison of the sequences revealed eight regions of aa conservation in addition to seven previously identified helicase superfamily domains. The nt sequence 5' to the mutB ORF contains several potential regulatory motifs, including a LexA-binding site. Based upon these observations, we are confident that the mutB gene of H. influenzae encodes an ATP-dependent DNA helicase-like activity.
Insights
Researchers identified a DNA fragment in Haemophilus influenzae that complements mutations affecting DNA repair. This fragment contains a gene, mutB, encoding an ATP-dependent DNA helicase, crucial for DNA repair mechanisms.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- The mutator and UV sensitive phenotypes of Haemophilus influenzae mutB1 mutants indicate defects in DNA repair pathways.
- Understanding the genetic basis of DNA repair is crucial for microbial genetics and understanding mutagenesis.
Purpose of the Study:
- To isolate and characterize the gene responsible for complementing the mutator and UV sensitive phenotypes in H. influenzae.
- To elucidate the molecular function of the H. influenzae mutB gene.
Main Methods:
- Genomic DNA fragment isolation and complementation assays in H. influenzae and Escherichia coli.
- Nucleotide sequencing of the isolated DNA fragment.
- Bioinformatic analysis to identify open reading frames (ORFs) and compare sequences with known genes.
Main Results:
- A 6.2-kb DNA fragment from H. influenzae was isolated that complemented mutator and UV sensitive phenotypes.
- The fragment contained a 2184 bp ORF with significant nucleotide and amino acid similarity to the E. coli uvrD gene.
- Sequence analysis revealed conserved helicase superfamily domains and potential regulatory motifs, including a LexA-binding site.
Conclusions:
- The H. influenzae mutB gene encodes an ATP-dependent DNA helicase-like activity.
- This enzyme likely plays a role in DNA repair and/or mutagenesis in H. influenzae.
- The findings provide insights into the conservation of DNA repair mechanisms across bacterial species.
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