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The ribosomal database project

N Larsen1, G J Olsen, B L Maidak

  • 1Department of Microbiology, University of Illinois, Urbana 61801.

Nucleic Acids Research
|July 1, 1993
PubMed
Summary
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The Ribosomal Database Project (RDP) provides curated ribosomal RNA (rRNA) data, including alignments and phylogenetic trees. It offers analysis tools and services for researchers studying ribosome structure and evolution.

Area of Science:

  • Molecular Biology
  • Bioinformatics
  • Evolutionary Biology

Background:

  • The Ribosomal Database Project (RDP) is a vital resource for researchers studying ribosomal RNA (rRNA).
  • Access to curated rRNA sequence data, phylogenetic trees, and structural information is crucial for understanding ribosome function and evolution.

Purpose of the Study:

  • To provide a comprehensive, curated database of ribosomal RNA (rRNA) sequences.
  • To offer associated tools and services for the analysis and visualization of rRNA data.
  • To facilitate research in molecular biology, bioinformatics, and evolutionary biology.

Main Methods:

  • Curating and organizing a large collection of ribosomal RNA (rRNA) sequences.
  • Developing phylogenetically ordered alignments of rRNA sequences.

Related Experiment Videos

  • Generating phylogenetic trees and rRNA secondary structure diagrams.
  • Providing software packages for data analysis and visualization.
  • Offering data access via FTP and electronic mail, including analytical services.
  • Main Results:

    • A well-curated database of ribosomal RNA (rRNA) sequences is available.
    • Phylogenetically ordered alignments and derived phylogenetic trees are accessible.
    • rRNA secondary structure diagrams and analysis software are provided.
    • Data and analytical services are readily available through FTP and email.

    Conclusions:

    • The Ribosomal Database Project (RDP) serves as a central hub for ribosome-related research.
    • The comprehensive data and tools accelerate studies in molecular biology and evolution.
    • Continued curation and service provision by RDP support ongoing scientific discovery.