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Related Concept Videos

Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence the...
Electron Transport Chain: Complex I and II01:46

Electron Transport Chain: Complex I and II

The mitochondrial electron transport chain (ETC) is the main energy generation system in the eukaryotic cells. However, mitochondria also produce cytotoxic reactive oxygen species (ROS) due to the large electron flow during oxidative phosphorylation. While Complex I is one of the primary sources of superoxide radicals, ROS production by Complex II is uncommon and may only be observed in cancer cells with mutated complexes.
ROS generation is regulated and maintained at moderate levels necessary...
The Electron Transport Chain01:30

The Electron Transport Chain

The electron transport chain or oxidative phosphorylation is an exothermic process in which free energy released during electron transfer reactions is coupled to ATP synthesis. This process is a significant source of energy in aerobic cells, and therefore inhibitors of the electron transport chain can be detrimental to the cell's metabolic processes.
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q in...
Electron Transport Chain: Complex III and IV01:43

Electron Transport Chain: Complex III and IV

During the electron transport chain, electrons from NADH and FADH2 are first transferred to complexes I and II, respectively. These two complexes then transfer the electrons to ubiquinol, which carries them further to complex III. Complex III passes the electrons across the intermembrane space to Cyt c, which carries them further to complex IV. Complex IV donates electrons to oxygen and reduces it to water. As electrons pass through complexes I, III, and IV, the energy released aids the pumping...
Redox Reactions01:27

Redox Reactions

Redox reactions are vital biochemical processes that underpin energy metabolism in cells. These reactions involve the transfer of electrons between molecules, occurring in tandem as oxidation and reduction. Oxidation refers to the loss of electrons, while reduction denotes their gain. This coupling ensures the seamless flow of electrons through metabolic pathways. For example, in bacterial metabolism, glucose undergoes oxidation to carbon dioxide, while oxygen is simultaneously reduced to...

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Profiling Thiol Redox Proteome Using Isotope Tagging Mass Spectrometry
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Charge pair interactions stabilizing ferredoxin-ferredoxin reductase complexes. Identification by complementary

M E Brandt1, L E Vickery

  • 1Department of Physiology and Biophysics, University of California, Irvine 92717.

The Journal of Biological Chemistry
|August 15, 1993
PubMed
Summary
This summary is machine-generated.

Specific charged residues on ferredoxin reductase (Fd-reductase) are crucial for binding to ferredoxin. Mutating Arg-239 and Arg-243 significantly reduced binding affinity, indicating their direct role in complex stabilization.

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Enzymology

Background:

  • Ferredoxin reductase (Fd-reductase) is essential for electron transfer to mitochondrial P450 enzymes.
  • Previous studies implicated Lys-243 in bovine Fd-reductase binding to ferredoxin.
  • The specific interactions governing this protein-protein complex remain incompletely understood.

Purpose of the Study:

  • To investigate the role of charged residues in human Fd-reductase for ferredoxin binding using site-directed mutagenesis.
  • To elucidate the electrostatic interactions critical for the ferredoxin-Fd-reductase complex formation.

Main Methods:

  • Site-directed mutagenesis of human Fd-reductase.
  • Expression of mutant proteins in Escherichia coli.
  • Assay of ferredoxin-mediated electron transfer activity and determination of Michaelis constants (Km).

Main Results:

  • Mutations R239S and R243Q in Fd-reductase drastically increased Km, indicating significantly lower affinity for ferredoxin.
  • Mutations at Lys-242 and Arg-241 showed minimal impact on ferredoxin binding.
  • Analysis of ferredoxin mutants (D76N, D79N) binding to Fd-reductase mutants suggests direct electrostatic interactions between Arg-239/Arg-243 of Fd-reductase and Asp-76/Asp-79 of ferredoxin.

Conclusions:

  • Arg-239 and Arg-243 of human Fd-reductase are critical for high-affinity binding to ferredoxin.
  • Specific electrostatic interactions between these arginine residues and aspartate residues on ferredoxin stabilize the complex.
  • These findings highlight the importance of charge-charge interactions in mediating protein-protein recognition in biological systems.