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Updated: Aug 17, 2026

Preparation and Using Phantom Lesions to Practice Fine Needle Aspiration Biopsies
Published on: September 29, 2009
Processing fine needle aspiration biopsies for electron microscopic examination. Experience implementing a procedure
E Ravinsky1, G E Quinonez, M Paraskevas
1Department of Pathology, University of Manitoba Health Sciences Centre, Winnipeg, Canada.
Abstract:
While processing needle rinses from fine needle aspiration biopsy material for electron microscopy, we experienced difficulties not fully outlined previously. Problems in preservation were traced to the time elapsed before glutaraldehyde was added to the needle rinse, which had been held in a physiologic transport medium; a tendency toward hypotonicity of the commercially prepared transport medium; and vigorous handling of the needle rinse. When these problems were dealt with, preservation improved dramatically. The problem of scanty material available for ultrastructural evaluation was dealt with by decreasing the number of smears made and filtering the needle rinse to capture tissue fragments. Implementation of the procedure required leadership, good communication, motivated cytotechnologists and cytopathologists, and continuous supervision and monitoring. In cases with adequately cellular well-preserved material available for electron microscopy, ultrastructural evaluation made a contribution of clinical value to the diagnosis in 48% of cases.
Insights
Optimizing electron microscopy for fine needle aspiration biopsy requires proper glutaraldehyde fixation and careful sample handling. Improved methods significantly enhance preservation and diagnostic yield in ultrastructural evaluations.
Area of Science:
- Pathology
- Microscopy
- Cell Biology
Background:
- Fine needle aspiration (FNA) biopsy is crucial for diagnosis.
- Electron microscopy (EM) provides detailed ultrastructural information.
- Previous methods for processing FNA rinses for EM had preservation issues.
Purpose of the Study:
- To identify and resolve preservation challenges in processing FNA rinses for EM.
- To improve the quality and quantity of material available for ultrastructural analysis.
- To assess the clinical diagnostic contribution of EM in FNA cases.
Main Methods:
- Investigated factors affecting preservation: glutaraldehyde fixation time, transport medium tonicity, and sample handling.
- Implemented solutions: prompt glutaraldehyde addition, adjusted transport medium, and gentler handling.
- Developed a filtration method to concentrate tissue fragments from needle rinses.
- Required multidisciplinary team collaboration and continuous quality monitoring.
Main Results:
- Dramatic improvement in preservation after addressing fixation and handling issues.
- Filtration effectively captured scarce tissue fragments for ultrastructural evaluation.
- Ultrastructural evaluation contributed clinically valuable information in 48% of cases with adequate material.
Conclusions:
- Optimized processing protocols significantly enhance the utility of EM for FNA biopsies.
- Careful attention to sample handling and fixation is critical for diagnostic EM.
- EM can provide valuable diagnostic insights in a substantial proportion of FNA cases.
Related Concept Videos
Preparation of Samples for Electron Microscopy
Overview of Microscopy Techniques

