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Doing sequence analysis with your printer

D B Searls1

  • 1Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia 19104-6145.

Computer Applications in the Biosciences : CABIOS
|August 1, 1993
PubMed
Summary
This summary is machine-generated.

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Rapid Sequence Visualization in PostScript (RSVP) offers platform-independent tools for quick sequence data analysis. Its visual routines highlight patterns using form and color before advanced analyses.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Scientific Visualization

Background:

  • Sequence analysis is crucial in bioinformatics.
  • Existing tools may lack platform independence or visual clarity.
  • Visualizing sequence data aids in pattern recognition.

Purpose of the Study:

  • Introduce RSVP (Rapid Sequence Visualization in PostScript) software.
  • Provide a platform-independent tool for preliminary sequence data examination.
  • Enhance pattern identification in sequence data through visual representation.

Main Methods:

  • Developed a suite of visually oriented sequence analysis routines.
  • Implemented routines entirely in the PostScript page description language.
  • Utilized form and color for visual pattern highlighting.

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Main Results:

  • RSVP provides a 'quick look' at sequence data.
  • The software is relatively platform-independent due to PostScript implementation.
  • Visualizations effectively assist in identifying patterns.

Conclusions:

  • RSVP serves as a valuable preliminary tool for sequence analysis.
  • Its visual approach complements more sophisticated analytical methods.
  • Platform independence makes RSVP accessible across various computing environments.